Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 4e-15
seq152438 93.3 4e-14
>seq1
Length=47594283
Score = 96.9 bits (106), Expect = 4e-15
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 21169 tGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCC 21228
|||||| | ||||||| | ||||| || | ||||| || || ||||||||||| || ||
Sbjct 29600054 TGACATTACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCC 29600113
Query 21229 TTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279
||||||||| || ||||||||| |||||||| ||||| |||||| ||
Sbjct 29600114 TTCCAATGAGATGTTTTCCATAAAGTCAAATGGGTTTTCTACTTTAAAAAT 29600164
>seq152438
Length=1158950
Score = 93.3 bits (102), Expect = 4e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| ||||| ||| | ||| |||||| | | | |
Sbjct 134885 TTTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGACATTACTGCAAAAC 134826
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| ||| |||| ||| || || ||||||||||| ||||| || || ||| |
Sbjct 134825 GCTGATACTCAGAGACTCGTTTCTCAAAGAAATTTGTCTTCCCTTCTAAAGAAATATTCT 134766
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276
|||| || ||||||||||| || || | |||
Sbjct 134765 CCATGAAGTCAAATGGATTGTCGGAATGAAA 134735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530570024090960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |