Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 4e-15 seq152438 93.3 4e-14 >seq1 Length=47594283 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21169 tGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCC 21228 |||||| | ||||||| | ||||| || | ||||| || || ||||||||||| || || Sbjct 29600054 TGACATTACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCC 29600113 Query 21229 TTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 ||||||||| || ||||||||| |||||||| ||||| |||||| || Sbjct 29600114 TTCCAATGAGATGTTTTCCATAAAGTCAAATGGGTTTTCTACTTTAAAAAT 29600164 >seq152438 Length=1158950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||| ||| | ||| |||||| | | | | Sbjct 134885 TTTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGACATTACTGCAAAAC 134826 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| ||| |||| ||| || || ||||||||||| ||||| || || ||| | Sbjct 134825 GCTGATACTCAGAGACTCGTTTCTCAAAGAAATTTGTCTTCCCTTCTAAAGAAATATTCT 134766 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 |||| || ||||||||||| || || | ||| Sbjct 134765 CCATGAAGTCAAATGGATTGTCGGAATGAAA 134735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530570024090960