Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 3e-23
seq152438 111 2e-19
seq152282 104 3e-17
>seq1
Length=47594283
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
||||||||||||| || ||||| |||||||| ||||| || ||||||| || | || |
Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| |||||||| || || || ||||||||||||||||| ||||| || |||||||
Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069
Query 33446 C 33446
|
Sbjct 29602070 C 29602070
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/143 (76%), Gaps = 3/143 (2%)
Strand=Plus/Plus
Query 32953 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCTTGA-GACATAACTCCC 33009
|| || || ||||| |||| |||| |||| ||| || || || ||||| ||||||
Sbjct 29600007 TTCCTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCC 29600066
Query 33010 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 33069
||| | || ||||| || || | || || |||||||| ||||| ||||||||||| ||
Sbjct 29600067 ATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATG 29600126
Query 33070 TTTTCCATGAAATCAAACGGATT 33092
|||||||| || ||||| || ||
Sbjct 29600127 TTTTCCATAAAGTCAAATGGGTT 29600149
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624
||||||| || || || || | |||||| ||||| |||||||| || ||||| || ||
Sbjct 29604512 TCTTTAATGTACGTGTCAATAAGAAGACTGTACATCTCCGAATGGATATTTTCCATAGCA 29604571
Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684
|| || || || |||||||| | ||||| || |||||||||||| | ||| || |||
Sbjct 29604572 ATTTGGAAACCATAGAAACACCGCGCCTCTGTTATCTGTACTTCTTGGCTAAAGCGCTCC 29604631
Query 33685 GCC 33687
||
Sbjct 29604632 ACC 29604634
>seq152438
Length=1158950
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
||||||||| || || ||||| || || || || | ||| ||||| || || | ||| |
Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||||| ||| || ||||| || |||||||||||||| || || |||||||
Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037
Query 33446 CAATAAGTCTCTCTCC 33461
||| | ||| || ||
Sbjct 125036 CAACCACTCTTTCCCC 125021
Score = 102 bits (112), Expect = 1e-16
Identities = 105/136 (77%), Gaps = 1/136 (1%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
||||||||| || || ||||| || || || | | ||| ||||| || || | ||| |
Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||||| ||| || ||||| || |||||||||||||| || || |||||||
Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966
Query 33446 CAATAAGTCTCTCTCC 33461
||| | ||| || ||
Sbjct 127965 CAACCACTCTTTCCCC 127950
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860
||| ||||| ||||||| || ||||||| ||| | ||||||||| |||||||| |||
Sbjct 103313 TACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGG 103254
Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886
|| |||||||||||||| |||||||
Sbjct 103253 GTACTGGATTGGGAAAATGACAAATC 103228
>seq152282
Length=256244
Score = 104 bits (114), Expect = 3e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| |||||||||||||||| ||||| |||||||| || || ||||| || ||||| |
Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448
||||| ||||| ||||| || || ||||| || ||||| ||||| || ||||
Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588
Score = 104 bits (114), Expect = 3e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| |||||||||||||||| ||||| |||||||| || || ||||| || ||||| |
Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448
||||| ||||| ||||| || || ||||| || ||||| ||||| || ||||
Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| ||| |||||||| |||||||| |||||||| || || | ||| || || |||| ||
Sbjct 185784 CTCCACACGTTTCATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCG 185843
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
||||| || || || || ||||| || | ||| || || | | || || ||||||
Sbjct 185844 CTGTTCTTCCTTGCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCA 185903
Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364
|||||| | ||| ||||| | ||||||||||
Sbjct 185904 CGGTTCGAGGTAAATGGCAAATGCTCCAGGCCG 185936
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 62567 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62626
||| ||| ||| || || ||||| || | | || || || ||||| || || || |
Sbjct 180583 CGAGCCTTGATAGGTTTCATATGGGCCATGGTCCTTGGCAAGGTCACAGCTGGCATCCAG 180642
Query 62627 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 62686
|| || |||||||| ||||||||||| | || ||| || || || || |||| ||
Sbjct 180643 GGCTCCATAATAAATCGTTTCGAAGATTTGCTGATTCAGTAACTGGGCCTCGGGGCTCTC 180702
Query 62687 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746
||| ||||| | | || ||||| || ||||| | ||||| || || || || || ||
Sbjct 180703 AAAGGGATACCTCATCAGGATAAAAGCATCCGCCAGGCCTTGCACGCCGATTCCAATGGG 180762
Query 62747 TCTATGTCTCTTATTAGAG 62765
| ||| | ||| || |||
Sbjct 180763 GCGATGGCGCTTGTTGGAG 180781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621388632826640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |