Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq152438 111 2e-19 seq152282 104 3e-17 >seq1 Length=47594283 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||||||| || ||||| |||||||| ||||| || ||||||| || | || | Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| |||||||| || || || ||||||||||||||||| ||||| || ||||||| Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069 Query 33446 C 33446 | Sbjct 29602070 C 29602070 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/143 (76%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 32953 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCTTGA-GACATAACTCCC 33009 || || || ||||| |||| |||| |||| ||| || || || ||||| |||||| Sbjct 29600007 TTCCTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCC 29600066 Query 33010 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 33069 ||| | || ||||| || || | || || |||||||| ||||| ||||||||||| || Sbjct 29600067 ATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATG 29600126 Query 33070 TTTTCCATGAAATCAAACGGATT 33092 |||||||| || ||||| || || Sbjct 29600127 TTTTCCATAAAGTCAAATGGGTT 29600149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||||| || || || || | |||||| ||||| |||||||| || ||||| || || Sbjct 29604512 TCTTTAATGTACGTGTCAATAAGAAGACTGTACATCTCCGAATGGATATTTTCCATAGCA 29604571 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || || || || |||||||| | ||||| || |||||||||||| | ||| || ||| Sbjct 29604572 ATTTGGAAACCATAGAAACACCGCGCCTCTGTTATCTGTACTTCTTGGCTAAAGCGCTCC 29604631 Query 33685 GCC 33687 || Sbjct 29604632 ACC 29604634 >seq152438 Length=1158950 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| || || ||||| || || || || | ||| ||||| || || | ||| | Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||||| ||| || ||||| || |||||||||||||| || || ||||||| Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | ||| || || Sbjct 125036 CAACCACTCTTTCCCC 125021 Score = 102 bits (112), Expect = 1e-16 Identities = 105/136 (77%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| || || ||||| || || || | | ||| ||||| || || | ||| | Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||||| ||| || ||||| || |||||||||||||| || || ||||||| Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | ||| || || Sbjct 127965 CAACCACTCTTTCCCC 127950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||| | ||||||||| |||||||| ||| Sbjct 103313 TACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGG 103254 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 || |||||||||||||| ||||||| Sbjct 103253 GTACTGGATTGGGAAAATGACAAATC 103228 >seq152282 Length=256244 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || |||||||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 ||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || |||||||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 ||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || ||| |||||||| |||||||| |||||||| || || | ||| || || |||| || Sbjct 185784 CTCCACACGTTTCATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCG 185843 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || || || || ||||| || | ||| || || | | || || |||||| Sbjct 185844 CTGTTCTTCCTTGCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCA 185903 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 |||||| | ||| ||||| | |||||||||| Sbjct 185904 CGGTTCGAGGTAAATGGCAAATGCTCCAGGCCG 185936 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62567 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62626 ||| ||| ||| || || ||||| || | | || || || ||||| || || || | Sbjct 180583 CGAGCCTTGATAGGTTTCATATGGGCCATGGTCCTTGGCAAGGTCACAGCTGGCATCCAG 180642 Query 62627 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 62686 || || |||||||| ||||||||||| | || ||| || || || || |||| || Sbjct 180643 GGCTCCATAATAAATCGTTTCGAAGATTTGCTGATTCAGTAACTGGGCCTCGGGGCTCTC 180702 Query 62687 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 ||| ||||| | | || ||||| || ||||| | ||||| || || || || || || Sbjct 180703 AAAGGGATACCTCATCAGGATAAAAGCATCCGCCAGGCCTTGCACGCCGATTCCAATGGG 180762 Query 62747 TCTATGTCTCTTATTAGAG 62765 | ||| | ||| || ||| Sbjct 180763 GCGATGGCGCTTGTTGGAG 180781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621388632826640