Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq171586 107 2e-18 seq152076 104 2e-17 seq152203 93.3 3e-14 >seq171586 Length=8203 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | || || | || Sbjct 2680 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCTTCAAGCTGC 2739 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| ||| | ||| || ||||| |||| Sbjct 2740 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATTTTG 2799 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 2800 GCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCCGTC 2859 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || |||||||||||||||||| Sbjct 2860 AGGGTCTTCACAAAAATCTGCATTTTG 2886 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | || || | || Sbjct 1996 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGC 2055 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| ||| | |||||| ||||| |||| Sbjct 2056 TTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTG 2115 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 2116 GCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTC 2175 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 2176 AGGGTCTTCACGAAGATCTGCAT 2198 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | || || | || Sbjct 2224 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGC 2283 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| ||| | |||||| ||||| |||| Sbjct 2284 TTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTG 2343 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 2344 GCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCCGTC 2403 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 2404 AGGGTCTTCACGAAGATCTGCAT 2426 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | || || | || Sbjct 1768 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGC 1827 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| || | |||||| ||||| |||| Sbjct 1828 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATTTTG 1887 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 1888 GCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTC 1947 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 1948 AGTGTCTTCACGAAGATCTGCAT 1970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | | || | | || || | || Sbjct 2452 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGGCCATCTTCAAGCTGC 2511 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| || | |||||||||||| |||| Sbjct 2512 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATTTTG 2571 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 2572 GCCTTCACATTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCCGTC 2631 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 2632 AGGGTCTTCACGAAGATCTGCAT 2654 >seq152076 Length=2538501 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | | || | || || | || Sbjct 779017 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGACCATCTTCAAGCTGC 779076 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| ||| | ||| || ||||| |||| Sbjct 779077 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATTTTG 779136 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 779137 GCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCCGTC 779196 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || |||||||||||||||||| Sbjct 779197 AGGGTCTTCACAAAAATCTGCATTTTG 779223 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | || || | || Sbjct 778105 TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGC 778164 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| ||| | |||||| ||||| |||| Sbjct 778165 TTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTA 778224 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 778225 GCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCCGTC 778284 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 778285 AGGGTCTTCACGAAGATCTGCAT 778307 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | || || | || Sbjct 778333 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGC 778392 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| ||| | |||||| ||||| |||| Sbjct 778393 TTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTA 778452 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 778453 GCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTC 778512 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 778513 AGGGTCTTCACGAAGATCTGCAT 778535 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | || || | || Sbjct 778561 TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGC 778620 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| || | |||||||||||| |||| Sbjct 778621 TTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTGTCCTGGATTTTG 778680 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 778681 GCCTTCACATTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCCGTC 778740 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 778741 AGGGTCTTCACGAAGATCTGCAT 778763 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | || || | || Sbjct 778789 TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGC 778848 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| ||| | |||||| ||||| |||| Sbjct 778849 TTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTG 778908 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| |||| ||||||||| || || ||| Sbjct 778909 GCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTC 778968 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 778969 AGTGTCTTCACGAAGATCTGCAT 778991 >seq152203 Length=2432022 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||| | Sbjct 2337576 CCACCTCTGAGGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAT 2337635 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || || || ||| | || | | ||| || ||| || Sbjct 2337636 AAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGG 2337695 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 2337696 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCCA 2337753 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || ||||||| || || ||||| |||||||| Sbjct 2337754 CTTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2337802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| || || ||||| || ||||||||||| | | ||| | || Sbjct 2337362 CAGGACCAAATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATC 2337421 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || || || ||| | || | | ||| || ||| || | ||| |||||||| Sbjct 2337422 TTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTGTC 2337481 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | ||||||| ||||| ||||||| Sbjct 2337482 TTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 2337539 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||| || || ||||| |||||||| Sbjct 2337540 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2337574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404099837700460