Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 2e-15
seq152282 96.9 7e-15
seq152438 87.8 3e-12
>seq1
Length=47594283
Score = 98.7 bits (108), Expect = 2e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
||||||||| | || || ||||| |||||||| || || | || || ||||| ||||||
Sbjct 29602073 GTAGCCTTTGCAGCGGTAGAGGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 29602014
Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827
|||||| | | | || ||||| || ||||| || || || ||||||||||| || |||
Sbjct 29602013 CTCAAGAAAAGAGGGTTAATGCCTGGGCTCACTTTTTCCAATGAACTCATCAGTAGAGAC 29601954
Query 42828 GAGG 42831
||||
Sbjct 29601953 GAGG 29601950
>seq152282
Length=256244
Score = 96.9 bits (106), Expect = 7e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070
||||||||| || || ||||||||||| || |||||||||| | ||| || |||
Sbjct 185796 CATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCGCTGTTCTTCCTT 185855
Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130
||||||||||||| ||| |||| ||| ||||||| ||| | ||||| || || | |||
Sbjct 185856 GCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCACGGTTCGAGGTA 185915
Query 245131 GACAGCGAGGGCGCCGGGCCGCT 245153
| || | || || |||||||
Sbjct 185916 AATGGCAAATGCTCCAGGCCGCT 185938
Score = 91.5 bits (100), Expect = 3e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778
||||||||| ||| || || ||||| ||||| || || |||||||| ||||||| ||| |
Sbjct 182820 TGGTGTACTCGACGATTTCCGTGCACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCT 182879
Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838
| ||| ||| || || | |||||||||||||||| | ||| |||||||| ||
Sbjct 182880 GGTTGCTCTTCCGATTACAAGTGTCCTTGTAGAGCATGTACGGCGTTCCGGTCTCCGTCT 182939
Query 244839 ggg 244841
|||
Sbjct 182940 GGG 182942
>seq152438
Length=1158950
Score = 87.8 bits (96), Expect = 3e-12
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| | || || || || ||||||||||| || |||| || |||| || |
Sbjct 125031 TGGTTGCCTTTGCGGCTGTGGAAGGAATCTTCTTCTCCGGATCCTTTGCTGCCATATTTT 125090
Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| || ||| ||| ||||| ||| | || ||||| || |||||||| ||| |
Sbjct 125091 GGCTGAAGAAG-AGGGGTCTTATGCCTGGATTAACTTTCTCTAATGAACTCATAAGCCGA 125149
Query 42825 GACGAGG 42831
|||||||
Sbjct 125150 GACGAGG 125156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 941976534147040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |