Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 2e-15 seq152282 96.9 7e-15 seq152438 87.8 3e-12 >seq1 Length=47594283 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || ||||| |||||||| || || | || || ||||| |||||| Sbjct 29602073 GTAGCCTTTGCAGCGGTAGAGGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 29602014 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 |||||| | | | || ||||| || ||||| || || || ||||||||||| || ||| Sbjct 29602013 CTCAAGAAAAGAGGGTTAATGCCTGGGCTCACTTTTTCCAATGAACTCATCAGTAGAGAC 29601954 Query 42828 GAGG 42831 |||| Sbjct 29601953 GAGG 29601950 >seq152282 Length=256244 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||||||||| || || ||||||||||| || |||||||||| | ||| || ||| Sbjct 185796 CATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCGCTGTTCTTCCTT 185855 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||||||||||||| ||| |||| ||| ||||||| ||| | ||||| || || | ||| Sbjct 185856 GCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCACGGTTCGAGGTA 185915 Query 245131 GACAGCGAGGGCGCCGGGCCGCT 245153 | || | || || ||||||| Sbjct 185916 AATGGCAAATGCTCCAGGCCGCT 185938 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| ||| || || ||||| ||||| || || |||||||| ||||||| ||| | Sbjct 182820 TGGTGTACTCGACGATTTCCGTGCACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCT 182879 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 | ||| ||| || || | |||||||||||||||| | ||| |||||||| || Sbjct 182880 GGTTGCTCTTCCGATTACAAGTGTCCTTGTAGAGCATGTACGGCGTTCCGGTCTCCGTCT 182939 Query 244839 ggg 244841 ||| Sbjct 182940 GGG 182942 >seq152438 Length=1158950 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || ||||||||||| || |||| || |||| || | Sbjct 125031 TGGTTGCCTTTGCGGCTGTGGAAGGAATCTTCTTCTCCGGATCCTTTGCTGCCATATTTT 125090 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| || ||| ||| ||||| ||| | || ||||| || |||||||| ||| | Sbjct 125091 GGCTGAAGAAG-AGGGGTCTTATGCCTGGATTAACTTTCTCTAATGAACTCATAAGCCGA 125149 Query 42825 GACGAGG 42831 ||||||| Sbjct 125150 GACGAGG 125156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941976534147040