Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq152282 89.7 5e-13 seq152203 87.8 2e-12 >seq152282 Length=256244 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || |||||||||||||||||||||||||| ||| | || || |||| | ||| ||| Sbjct 182934 GAGACCGGAACGCCGTACATGCTCTACAAGGACACTTGTAATCGGAAGAGCAACCAGCAG 182875 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 ||| |||| || || |||||||| || || ||| | ||||| |||| |||| Sbjct 182874 AACCTGGGGACCATCAAATGTAGCAACCTGTGCACGGAAATCGTCGAGTACA 182823 >seq152203 Length=2432022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || |||||||| ||||| || || || | ||| ||| |||| || Sbjct 2337371 ATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCTTCCAGCTG 2337430 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| || | ||||||| ||||| ||||| || ||||||||||| ||||| || || Sbjct 2337431 CTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTGTCTTGGATCTT 2337490 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||| || | || | |||||| | ||| ||||| || || | || ||||||| Sbjct 2337491 GGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGG 2337549 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | || || ||||| || ||||| Sbjct 2337550 TCAAGGTCTTCACAAAGATCTGCAT 2337574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||| |||||||| || || | ||| ||| |||| || Sbjct 2338284 TGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAAGGTGCGCCCATCTTCCAGCTGC 2338343 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||||| ||||| ||||| || ||||||||||| || || || || Sbjct 2338344 TTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTGTCCTGGATCTTG 2338403 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| | ||| || ||||| || | ||||| || || Sbjct 2338404 GCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTTTTACCAGTC 2338463 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||||| |||||||| ||||| Sbjct 2338464 AAGGTTTTCACAAAAATCTGCAT 2338486 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||| |||||||| || || | ||| ||| |||| || Sbjct 2338056 TGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAAGGTGCGCCCATCTTCCAGCTGC 2338115 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||||| ||||| ||||| || ||||||||||| || || || || Sbjct 2338116 TTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTGTCCTGGATCTTG 2338175 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| | ||| ||||| || || | || |||||||| Sbjct 2338176 GCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGT 2338234 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || ||||| Sbjct 2338235 CAAGGTCTTCACAAAGATCTGCAT 2338258 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||| ||||| || || || | ||| ||| |||| || Sbjct 2337600 TGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCTTCCAGCTGC 2337659 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||||| ||||| ||||| || ||||||||||| || || || || Sbjct 2337660 TTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTGTCCTGGATCTTG 2337719 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| | ||| ||||| || || | || |||||||| Sbjct 2337720 GCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGT 2337778 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || ||||| Sbjct 2337779 CAAGGTCTTCACAAAGATCTGCAT 2337802 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||| || ||||| || || | ||| ||| |||| || Sbjct 2337828 TGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGATAAGGTGCGCCCATCTTCCAGCTGC 2337887 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||||| ||||| ||||| || ||||||||||| || || || || Sbjct 2337888 TTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTGTCCTGGATCTTG 2337947 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| | ||| ||||| || || | || |||||||| Sbjct 2337948 GCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGT 2338006 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || ||||| Sbjct 2338007 CAAGGTCTTCACAAAGATCTGCAT 2338030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450872321893840