Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq152347 170 3e-37 seq152077 109 8e-19 >seq152347 Length=13568040 Score = 170 bits (188), Expect = 3e-37 Identities = 223/306 (73%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||||| || || || || |||||||| || || || || | ||| | | Sbjct 9543477 AACACTGAACGAGGTGAAGGGGCAGCCCTTCACGTTATTGCAGATCAGCGTCTGGAGCGA 9543536 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| || || || || || || || || || || || |||||||| | Sbjct 9543537 GGCTGTGTTGATGATTTCAAAGCCCACTTCTCCTCCAAAAGTACTAGGCTTCCAGTATTC 9543596 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || |||||| || ||||||||||||||| ||| ||||| || ||||| || | Sbjct 9543597 GGGAGAACAGATGGGATTGCCCATGAGCCCTTTCAGGGAGAACGGCGCTCCCAGTTCCAC 9543656 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGA 9113 ||| ||||||| |||||||| || || || |||||||| || | |||| ||| || | Sbjct 9543657 CATGGTCTCACCAAAGATGGCTCCCGGGCGGGGTTTTTCCACCA-GAAGAGCAGGATACA 9543715 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 | || | || |||| ||||| ||||||||||||||||||||||| || || ||||| | Sbjct 9543716 GCTCCATCGCATCGATATCGCCGTAGAGGGCTTCCAACTCGGCAGCCATGTCTTTCTCCC 9543775 Query 9174 CTACAA 9179 || ||| Sbjct 9543776 CTGCAA 9543781 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || || || || ||||| ||||||| |||| |||||||| || || | || Sbjct 9546001 ATGAGCCGGGTCGTCTGGAACAAGCGCTCGTCGTCCCACTCCGGGTGCTCCTGCGTAAGG 9546060 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || || || || | ||||||||| | |||||||| |||||||||||||| | || || Sbjct 9546061 ACGTCACACACGCGGTTGTGTTCCCGGAGCCATATCGTGGCGTACATCATCAGCCCGGGG 9546120 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | ||| || || || ||||| | ||||| | | || | Sbjct 9546121 ACCAGGCCGAACACCTCCTGCCCGACGGCGAACCGCAGGTGCTCGGGGATGTGAGGTGGG 9546180 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | |||| || ||||| || ||||| || |||||||| || ||||| Sbjct 9546181 TAAATCATTTCTGCCTGAGTATCTTTCACAGTGGGAGGGTACATTTCTCCATCAAT 9546236 Score = 104 bits (114), Expect = 3e-17 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCAT-ATCGGTCCTAAA 10180 ||||| ||||| | | || | ||||| ||||||||||| | || || ||| |||| Sbjct 9547747 CTTACGCCATGGTTTAGTGCTTTGGTGAAGGCCGGTCCTCG-ATGATGGTCAGTCTTAAA 9547805 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 || ||||| || ||||| ||| | || || |||||||||| || ||||| || ||||| Sbjct 9547806 GAACTGGTGAGTGAAGTGCTGCGCAAAGAACGCGAACATCATATTTGTGCCTTGAGGATC 9547865 Query 10241 GGGGATAAA-GGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGAC 10299 |||||||| || || | | ||||||| |||||||||| | | |||||||| || Sbjct 9547866 TGGGATAAATTTTCTTCTCAGCAGAAACTTT-TCCACAATCTCTTTGGAATCGGGAAGCT 9547924 Query 10300 GCGCCTTACCTGATGAGC 10317 | ||||||| | |||| Sbjct 9547925 CCTTCTTACCTAAAGAGC 9547942 Score = 96.9 bits (106), Expect = 5e-15 Identities = 195/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 |||||||| || | | ||||||||| || | ||| | ||||| | | | ||| Sbjct 9544505 CCGGCAATTTGCCGCGAGAACGATTCCACCATACGGGAAAGGCCGTGGTCCAGCATGATA 9544564 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||||| ||| || | ||| ||| | |||| || || || Sbjct 9544565 GAGTTGTTGTAAAGGAACTGCTGGTAGGTGTACACCTGGTCGTGAATATTGAAGGTGTCG 9544624 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | |||||| |||||||||| || |||||||| || || || ||||| ||| Sbjct 9544625 GGCAGAAGCGGGTGCCAGTGGTAGAGGGTGTTAAACTCGGCGGCGATGCGATTCTGATAC 9544684 Query 9616 TG-AAAGGC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || ||| || ||| || || | |||||| ||||| | || | |||||| || || | Sbjct 9544685 TGGAAACGCTGGTTA--AAAAGCAGCTCCGGATCAAACTTCAGTTTGAAGTGATAGCCAC 9544742 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| ||||| | | ||| | || ||||||||||| || Sbjct 9544743 TCAAGTGCTGAACATAGTCTTCGATCACGATCTTAATGGTTTCACC 9544788 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 10386 ATCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGT 10445 || |||||| || || | || || ||||||||| || ||||| || | ||| || Sbjct 9548716 ATTACCTTTGACACCCATTGGGGTTGGGCAGTCAGCTCCCACTGGAGGAAGTGCTCTGGT 9548775 Query 10446 ATAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAG 10505 ||||| || | || ||| | ||||||||||| ||||||||||||| | ||||| Sbjct 9548776 GTAATAAGAGATGTTTGAATAGGCTTCCCAGCTTTTGTAGCCATAATTTGCATTGTATGT 9548835 Query 10506 CGGGGGACTGTCAATCATCTCGGACCTGGCT 10536 ||| ||||||||||||| | |||||| ||| Sbjct 9548836 CGGTGGACTGTCAATCAAATGGGACCTCGCT 9548866 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 10863 CATAAAACCCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATA 10922 ||||| | || |||| |||||| ||||||| || || || || ||||| ||| | || | Sbjct 9549889 CATAATAGCCGGTCCTCGTACAGTCGCACCTGTACCGGTCGAATCCCACGGTCGTACACA 9549948 Query 10923 CCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTTGGCTGCAAT 10968 | ||||||||||| || |||| || ||||| |||||||||| ||| Sbjct 9549949 CACCTCGATTCTGACAGGGGTTGGAGCAGCATGGGTTGGCTGAAAT 9549994 >seq152077 Length=2433926 Score = 109 bits (120), Expect = 8e-19 Identities = 195/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| ||| || |||||||| | ||| || | | || || || ||||||| Sbjct 247597 GGACAGGTCTTGACGTTGGCACAGACGAGCTTGTGCAGCGAGGCCGTCTTGACGATGTTG 247656 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || ||||| |||||||||||||| ||||||||| | || ||||||||| ||| Sbjct 247657 AAGCCGGTCTCCCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGAGAGCAGATGGGGTTA 247716 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 ||| ||| || || | ||| || || || || | ||||| |||||||| ||||||||| Sbjct 247717 CCCAGGAGACCCTTGAGGGAGAAAGGCGCGCCGATCTCGACCATGCTCTCCCCGAAGATG 247776 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 | ||| | || || | | | || | ||||| || | ||| |||| ||| Sbjct 247777 GAGTTGGGCTGGCACTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGAGCATCGATGTCA 247836 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 || || || | | || ||||| || |||||| ||| ||| || Sbjct 247837 CCGTACAGCTCCTGCAGTTCGGCTGCCTTCTCCTGCTCGCCTGCA 247881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721917286823600