Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq152438 95.1 1e-14 seq152282 89.7 6e-13 >seq152438 Length=1158950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| |||||| || |||||||| ||||| || || ||||| ||||||| ||||| Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| |||| | || || ||| || || |||||||||||||| || |||||| |||||| Sbjct 125096 TCAGCCAAAATATGGCAGCA-AAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAG 125038 Query 117412 GCAA 117415 |||| Sbjct 125037 GCAA 125034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/124 (78%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| |||||| || |||||||| ||||| || || ||||| ||||||| ||||| Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAT-TAATCCAGGCATAAGACCCCTCTTCT 128026 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| |||| | || || ||| || || |||||||||||||| || |||||| |||||| Sbjct 128025 TCAGCCAAAATATGGCAGCA-AAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAG 127967 Query 117412 GCAA 117415 |||| Sbjct 127966 GCAA 127963 >seq152282 Length=256244 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | ||||| || |||| |||| || || || ||||||| |||| ||| Sbjct 182822 GTGTACTCGACGATTTCCGTGCACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGG 182881 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| || || | ||||||||||||||||| ||||| || ||||||||||| Sbjct 182882 TTGCTCTTCCGATTACAAGTGTCCTTGTAGAGCATGTACGGCGTTCCGGTCTCCGTCTGG 182941 Query 106625 GA 106626 || Sbjct 182942 GA 182943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588504712286960