Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 4e-21
>seq1
Length=47594283
Score = 116 bits (128), Expect = 4e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
||||||||||||| || | |||||| ||||| || | |||||||| | |||||||| |
Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || || ||||| |||||||| |
Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069
Query 19103 CAAC 19106
| ||
Sbjct 29602070 CTAC 29602073
Score = 114 bits (126), Expect = 1e-20
Identities = 110/139 (79%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 18623 CATCCAAAGAAAAAGAATTCTC--TTCATTAGAATTCATTACTCCCATTTTTTGATATTC 18680
||||||||| |||||||||||| || | ||| ||||||||||||| | ||||||||
Sbjct 29600023 CATCCAAAGTAAAAGAATTCTCAGTTGA--AGATGACATTACTCCCATTCTCTGATATTC 29600080
Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740
| ||||| || ||||| ||||| ||||| || || ||||| || ||||||||| ||
Sbjct 29600081 TCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATGTTTTCCATAAAGTC 29600140
Query 18741 AAATGGATTTTTTACATTA 18759
|||||| |||| ||| |||
Sbjct 29600141 AAATGGGTTTTCTACTTTA 29600159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560702445940560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |