Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 >seq1 Length=47594283 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||||||||| || | |||||| ||||| || | |||||||| | |||||||| | Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || || ||||| |||||||| | Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069 Query 19103 CAAC 19106 | || Sbjct 29602070 CTAC 29602073 Score = 114 bits (126), Expect = 1e-20 Identities = 110/139 (79%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 18623 CATCCAAAGAAAAAGAATTCTC--TTCATTAGAATTCATTACTCCCATTTTTTGATATTC 18680 ||||||||| |||||||||||| || | ||| ||||||||||||| | |||||||| Sbjct 29600023 CATCCAAAGTAAAAGAATTCTCAGTTGA--AGATGACATTACTCCCATTCTCTGATATTC 29600080 Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740 | ||||| || ||||| ||||| ||||| || || ||||| || ||||||||| || Sbjct 29600081 TCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATGTTTTCCATAAAGTC 29600140 Query 18741 AAATGGATTTTTTACATTA 18759 |||||| |||| ||| ||| Sbjct 29600141 AAATGGGTTTTCTACTTTA 29600159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560702445940560