Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq156569 105 5e-17 seq152203 98.7 8e-15 >seq156569 Length=26576 Score = 105 bits (116), Expect = 5e-17 Identities = 110/143 (77%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||| || |||| || | || || ||||| || || ||||| || |||||||| || || Sbjct 20297 AGTCACCAATGCTGTGGTCACAGTCCCAGCTTACTTCAATGATTCCCAACGTCAGGCCAC 20238 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 |||||||||||| ||||| || || ||||| || ||||| |||||||| || ||||| Sbjct 20237 CAAAGATGCTGGAACAATTGCCGGTCTCAATGTGCTCCGTATCATCAATGAGCCAACTGC 20178 Query 550510 TGCTGCACTTGCATATGGACTTG 550532 ||||| |||| ||||| |||| Sbjct 20177 CGCTGCTATTGCCTATGG-CTTG 20156 >seq152203 Length=2432022 Score = 98.7 bits (108), Expect = 8e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||| || || || | || || ||| ||| || |||||||| |||| || || Sbjct 2338265 CCTGAGGCGCAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAAGGT 2338324 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || ||||||||||| || | ||| |||||||| || || || || Sbjct 2338325 GCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCC 2338384 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTCGA 563431 |||||| || || || || || || |||||| || ||| || | ||| |||| Sbjct 2338385 TTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC-CTCGA 2338443 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||||||||| | ||||| || ||||| ||||| Sbjct 2338444 GGGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2338486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4018710953785460