Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq152305 120 2e-22
seq1 87.8 1e-12
>seq152305
Length=463424
Score = 120 bits (132), Expect = 2e-22
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| || || ||||| || ||||| | ||||| |||||||||||||||||
Sbjct 101676 AGGCCCGTGATATGTGCGATCATATATGTGAGTAATGAGTAACTGGCGATGTTAAAGGGC 101735
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| ||||| |||||||| || || |||||||| ||||| || |||||||| || | |
Sbjct 101736 ACTCCGAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAAGAGAGCTCACCATTCAAC 101795
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|| || ||||| || | | ||||| || || |||||||| ||
Sbjct 101796 ACATAGAACTGGCAGAGAGCATGGCAAGGGGGCAGAGCCATCAG 101839
Score = 102 bits (112), Expect = 7e-17
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208
|||| || |||| || || || ||||| ||||||||||| || || || ||||||| ||
Sbjct 105877 TCATCTCTTTGTATTCGGCACCAAAATGTCTCCACTGGAAGCCATAAACTGGTCCCAAGT 105936
Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
|||| || || ||| ||||| ||| |||| ||||| | || || ||||| |
Sbjct 105937 CTCCTTCCTCTCTGGAGGTAAAGCCATGCTTATCCAGGAAGTCCCGAGACCCATTGGCAT 105996
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||||| | || || || | ||||| ||||||| |||||||| ||
Sbjct 105997 CCCAGATCCTCACTCCTTTTGCAGAGAGTTCTTTGGCATTTGTGGAGCC 106045
>seq1
Length=47594283
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || |||||||| |||| || || |||||| ||| ||||| | | || || ||
Sbjct 12103591 TTTAGTTCTCTGCTGAGCACTATATTAATTCTGTCTTTCAAAGGTCGACTTTTCTCAGGA 12103532
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| ||||| ||||||||||||||| || || || |||
Sbjct 12103531 ATGGAGAACCAGGTCTTCTTACCCATTATCACCAGATTTTGTTTACCT 12103484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 407620827675842
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |