Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq152203 143 2e-29 seq152076 104 2e-17 seq171586 100 2e-16 >seq152203 Length=2432022 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||||||| || || ||||| || || ||||| || || | Sbjct 2337348 CCTCCCCTCAAGCGCAGGACCAAATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAT 2337407 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||||||| ||||||||||| || Sbjct 2337408 AAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGG 2337467 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || ||||| | || | |||||| | || ||| Sbjct 2337468 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACT 2337527 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2337528 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2337574 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||| ||||| || || || ||||| || || || || || || | Sbjct 2338260 CCACCCCTGAGGCGCAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 2338319 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||||||| ||||||||||| || Sbjct 2338320 AAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGG 2338379 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | || |||||| | || | |||||| | ||||| Sbjct 2338380 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 2338439 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || ||||| ||||| |||||||| ||||| ||||||||| Sbjct 2338440 TCGAGGGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2338487 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || |||||||| || || ||||| || || | | |||||| | Sbjct 2337588 CGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCA 2337647 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||||||| ||||||||||| || || || |||||| Sbjct 2337648 TCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTG 2337707 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||||| | || | |||||| | || ||||| || || || Sbjct 2337708 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 2337767 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || ||||| |||||||| Sbjct 2337768 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2337802 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||| ||||| || || || ||||| || ||||| || || || | Sbjct 2337804 CCACCCCTGAGGCGCAGAACCAAGTGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGAT 2337863 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||||||| ||||||||||| || Sbjct 2337864 AAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGG 2337923 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | || ||||| | || | |||||| | || ||| Sbjct 2337924 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACT 2337983 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2337984 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2338030 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||| ||||| || || || ||||| || || || || || || | Sbjct 2338032 CCACCCCTGAGGCGCAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 2338091 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||||||| ||||||||||| || Sbjct 2338092 AAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGG 2338151 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | || ||||| | || | |||||| | || ||| Sbjct 2338152 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACT 2338211 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2338212 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2338258 >seq152076 Length=2538501 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||| || | || || ||||| || || |||||||| || || | Sbjct 778537 CCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 778596 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | |||| || ||||| || || || Sbjct 778597 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGG 778656 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | ||| || ||| | || | |||||| | ||||| Sbjct 778657 ATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATTGTGTCACTGGGCTCTACC 778716 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 778717 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 778763 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| || || || | || || ||||| || || || ||||| || || | Sbjct 778993 CCACCCCTCAGGCGTAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 779052 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | |||| || ||||| || || || Sbjct 779053 AGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 779112 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || || | || | |||||| | ||||| Sbjct 779113 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACC 779172 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || ||||| ||||||||||| Sbjct 779173 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCATTTT 779222 >seq171586 Length=8203 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||| || | || || ||||| || || || ||||| || || | Sbjct 2656 CCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2715 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | |||| || ||||| || || || Sbjct 2716 AGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 2775 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || || | || | |||||| | ||||| Sbjct 2776 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATTGTGTCACTGGGCTCTACC 2835 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || ||||| ||||||||||| Sbjct 2836 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCATTTT 2885 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||| || | || || ||||| || || || ||||| || || | Sbjct 2428 CCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2487 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | |||| || ||||| || || || Sbjct 2488 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 2547 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | ||| || ||| | || | |||||| | ||||| Sbjct 2548 ATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATTGTGTCACTGGGCTCTACC 2607 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 2608 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384279505191714