Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq152203 181 2e-40
seq152489 87.8 4e-12
>seq152203
Length=2432022
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| ||||| ||||| || || |||||||||||||| ||||| || || || |||||
Sbjct 2337347 ACCTCCCCTCAAGCGCAGGACCAAATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGA 2337406
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || || ||||| |||||||| | ||| || ||||| || ||
Sbjct 2337407 TAAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGG 2337466
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| ||||| || ||||| ||||| || || || || ||||| || ||| | || || ||
Sbjct 2337467 GATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 2337526
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || |||||||| ||||| ||||| ||||| ||||||||
Sbjct 2337527 TTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2337574
Score = 179 bits (198), Expect = 7e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || || | |||||||| ||||||||||||||||| ||||| ||||| || ||||
Sbjct 2337802 TACCACCCCTGAGGCGCAGAACCAAGTGCAGAGTAGATTCCTTCTGAATATTGTAGTCAG 2337861
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| | | || ||||| || || ||||| |||||||| | ||| || ||||| || |
Sbjct 2337862 ATAAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGG 2337921
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || || || ||||| || || || || ||||| || ||| | || || |
Sbjct 2337922 GGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCA 2337981
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| || || |||||||| ||||| ||||| ||||| ||||||||
Sbjct 2337982 CTTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2338030
Score = 179 bits (198), Expect = 7e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || || | |||||||| ||||||||||||||||| ||||| ||||| || ||||
Sbjct 2338030 TACCACCCCTGAGGCGCAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAG 2338089
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| | | || ||||| || || ||||| |||||||| | ||| || ||||| || |
Sbjct 2338090 ATAAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGG 2338149
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || || || ||||| || || || || ||||| || ||| | || || |
Sbjct 2338150 GGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCA 2338209
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| || || |||||||| ||||| ||||| ||||| ||||||||
Sbjct 2338210 CTTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2338258
Score = 170 bits (188), Expect = 4e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| | ||||| || ||||||||||| ||||| ||||| || || || ||||
Sbjct 2337574 TACCACCTCTGAGGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 2337633
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| | | || ||||| || || ||||| |||||||| | ||| || ||||| || |
Sbjct 2337634 ATAAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGG 2337693
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || || || ||||| || || || || ||||| || ||| | || || |
Sbjct 2337694 GGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCA 2337753
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| || || |||||||| ||||| ||||| ||||| ||||||||
Sbjct 2337754 CTTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2337802
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || || | |||||||| ||||||||||||||||| ||||| ||||| || ||||
Sbjct 2338258 TACCACCCCTGAGGCGCAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAG 2338317
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| | | || ||||| || || ||||| |||||||| | ||| || ||||| || |
Sbjct 2338318 ATAAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGG 2338377
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || || || ||||| || || ||||| ||||| || ||| | || ||||
Sbjct 2338378 GGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 2338437
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| || | || || || || || ||||| || || ||||| |||||||||
Sbjct 2338438 CCTCGAGGGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2338487
>seq152489
Length=7015604
Score = 87.8 bits (96), Expect = 4e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369
|||||| ||||| ||||||||||||||||| ||||| || || |||||| ||||||| |
Sbjct 3174907 AGCATTCTTCGGCGCTCAGTTGAATTCCTTTATCCACGTGATCATGTATTCTTATTACGC 3174848
Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTA 60420
| || || ||||| | || | |||||| | ||||||||||||||
Sbjct 3174847 ACTAGCTGCCCTGGGACCACAGATTCAGAAGTATCTGTGGTGGAAGCGTTA 3174797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 979309330532206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |