Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq152207 196 6e-45 seq152548 190 2e-43 seq157043 116 4e-21 >seq152207 Length=3261333 Score = 196 bits (216), Expect = 6e-45 Identities = 605/929 (65%), Gaps = 13/929 (1%) Strand=Plus/Minus Query 162060 CAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTC 162119 ||||| ||||||| | ||||| ||||| || ||||| || | ||| || Sbjct 3125389 CAGGGCTTTATGTCTCACGTACTCCTCTAGGCATTGGACTGCATAGGAGTCAATGTCAGT 3125330 Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || | ||| || ||| | ||||| | | || ||| Sbjct 3125329 ATCAAACTTGTTGGCAAAGAAGTGGTGT---TTCCGTAGCATCCAGCTCAAGTCTCCCAC 3125273 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| ||||| |||||||| || ||||| | || ||| || ||||| | ||||| | Sbjct 3125272 TCCAAACACACACACGGAGCGGACGTGAATCCCCTGGCATGGTGGATATGGAGCCCCCTT 3125213 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||| || || |||| |||||||| || ||||| | || || ||||| || || Sbjct 3125212 GGAAACATCTCCTTCAAAGTAATGCCACTTCACAAACCTGGCGACTGCGTGCATATCCGA 3125153 Query 162300 GGTGTCGTACTT-GTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 ||| ||||| || | || | | || || ||||| | || | ||| || | | Sbjct 3125152 AACGTCATACTTAGTGCTG-GAAGAAAGCGCCCCGGGAACTTCGGGGATTCTTTGAATGG 3125094 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| | || ||| || ||||| || || || || | |||||| |||| || | Sbjct 3125093 TGGCCCATAAGTATTCATCGGGACTGTAGGTATCTTTAGCCCACTCGATGAGCTTAAATA 3125034 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | | || | || | | ||||| ||| |||| | ||| || ||||| | Sbjct 3125033 CTTTGCTACTCTCCAGCACAAACTCTACGTATTTTCTGCTCACCACAAAATAGGCGCTGC 3124974 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||| | || | | ||| ||||||| ||||| | ||| |||| || | Sbjct 3124973 CGGAAAAGATAGGAGTTTCGAGAGGTGGGGGCTGTTTGTTGCGTCCCATGTT--CTTCAG 3124916 Query 162539 TT--CCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTG 162596 || || || || | | | | |||| |||||||| | ||| | || | | Sbjct 3124915 TTTACCGTCGACAATCTCATAATGCTTCTTCCACCTGACTTCCTTGTTCAAAGGCATTTT 3124856 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 || || |||| || || ||||| | || ||| | || || || || | || Sbjct 3124855 CTCTGTTTCTAAGCTATTTTCACCCCTTAGGGACTTTAACTTCTCTACAATTTCCAAGTT 3124796 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 |||||| | ||| || || |||| |||||||| || | ||||||||| || || Sbjct 3124795 GGTCTTCATGGGGAAATCCATGCCACAGAGATTGATCAAATATTTCCAGTTTGTACTCTT 3124736 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || ||| ||||| | | ||||| || || ||||| || | |||||||| || ||||| Sbjct 3124735 TCTGTAGAGATCTTTCATGCAGTTGAGGTCTGCCTGCACTCTGCTCCACGATGCATACAC 3124676 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || ||||||| | | || | |||||||||| ||| || || | || ||| |||| Sbjct 3124675 AACACTCTCCAGTTGACTTGCAATGAAGACATTGTTGAAGCAAGATGCAATTCCCTTCAC 3124616 Query 162837 GGCCAGTGAGAACA--TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 || | | || || || | ||| | || || || | |||||| |||||| Sbjct 3124615 TGCAGCTAAAAAGGATTCCGGA--GATTTTTTGTCAACATGGATGCAGTAATAATTCTGG 3124558 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 ||||||||||||| |||||| | || || | ||| || || ||||||| ||||| || Sbjct 3124557 GGGGCGTAGATGGACCTCAGGAGTCGGTCAAGCATTTCAATTTTATGGTAAACCACTATG 3124498 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || || || ||||| ||||| || Sbjct 3124497 GAATAGGCAATCGGAAACTCTGCCTCTTC 3124469 >seq152548 Length=5724307 Score = 190 bits (210), Expect = 2e-43 Identities = 510/768 (66%), Gaps = 15/768 (2%) Strand=Plus/Plus Query 176888 CCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGGC 176947 |||||||||||| |||||| || | | ||||| || | | ||||| | | ||| Sbjct 2865984 CCAGTTAAAGTAACTAAGATACAGTTTATCATTTTTGTCAAGCTCCTTGAGATACTTGGC 2866043 Query 176948 CAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATT 177007 ||| ||| ||| || |||| || | |||||| ||||||| || |||||| ||||| Sbjct 2866044 CAGCTCTCCAGGAGAGTTGTAATCTTCCACGTGGATGAAAGAATCCGCCGGGATATAATT 2866103 Query 177008 TTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCG 177067 || || || ||||| || | || || || | ||| || | || |||| | || Sbjct 2866104 CTCATAGTTTTCTCTAGAAGGACCCAGCACCACGGGGACTGACCCAGCCAGGAAAGCATT 2866163 Query 177068 GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTT 177127 |||||| |||||||| || ||||| | || | |||||||| || | || |||||||| Sbjct 2866164 GTAGAGCTTTTCGGTGATGTAGTCTTTATGGATTGAGTTCTCGAAGGAAAGGTAGAATTT 2866223 Query 177128 ACAGGAAGATAGTAGCGGG-ATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCC 177186 || | |||| | | ||| || ||| | ||| | || ||||| | | | || Sbjct 2866224 GCAAGTCGATA-TGGTGGGAATCAAGCTTTTATCATTCACGTACTCTCCAAACGCTTGCC 2866282 Query 177187 CGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGTGGT 177246 |||| || || || |||| ||| || ||||| ||||||| | ||| |||| | Sbjct 2866283 CGTAGGTGTGGATCTCAATGTTTTTGCTTAGCTCATTGTAGTATTTGACTCTAGCGTGCT 2866342 Query 177247 CGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGATTC 177305 | ||||||||| || || |||||||| || | ||| |||||||| ||||| ||| Sbjct 2866343 CTGGGTTCCAATTACTCACCACCCAGCACACGAGCTT-CTCTTTGCTCGGAAC----TTC 2866397 Query 177306 G-ATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTC 177364 | | || || | || || | || | | ||||| ||||| ||||| || ||||| Sbjct 2866398 GAAGACAAAGGGGCTGGTGCTCACTGTCATGAAGCCATAAGGCACTTGAATGTCAGAGTC 2866457 Query 177365 GCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCTGTT 177424 |||| ||| || | || || ||||||||| |||||| || || ||| ||| Sbjct 2866458 TCGTCGGTAGGTCAGTGTCAGGTTGAAAAGGCGTTCTATCCCACTCTTCTGGGGCGTGTG 2866517 Query 177425 ACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGG 177484 | | || ||||| ||||||||||| ||||| || || || | || |||| | | ||| Sbjct 2866518 AGTTGGAGATTCCAAGTTCATCCAGATCCATTTCTGGAATGGCGGCCTGGCCTGCTGAGG 2866577 Query 177485 TAGAGTATA---AGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTT 177541 || ||| || ||| || || || || | |||||| | | ||||| | || ||| Sbjct 2866578 TA-AGT-TAGCCAGG-TCCCAGCTGATGTCACGGTGGTGGATCAGGACGGCGTGGGATTT 2866634 Query 177542 GTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTACA 177601 | || | ||| | ||| ||| | ||| || | | ||||| || ||| || Sbjct 2866635 ATTGTACAGAGAACGGTCCGTGGTCAGGTGGCAACCCTGGATGTTGAACATGGCCTGGCA 2866694 Query 177602 CGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGAGGAGTAT 177649 | | ||||| || | |||||| | |||||| ||||| ||||| Sbjct 2866695 GGACGTCAGATCGAAAGTCTGGCCGAATGGCCACACCCAGATCAGTAT 2866742 >seq157043 Length=30550 Score = 116 bits (128), Expect = 4e-21 Identities = 240/352 (68%), Gaps = 9/352 (3%) Strand=Plus/Minus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 ||||||||||| |||||||| | ||| ||||| || |||||| || | | || Sbjct 22054 CGCACCATCTCAGCGTTGGTCTTGATGGGGAAGTCCGTCCCGCAGGTGTTTAAGAGGTAC 21995 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 ||||| || | || |||| | ||| || | | ||||| ||||| || || || || Sbjct 21994 TTCCAAGGCAC-CGGACTCCGGAGCAGGTCTTCCATGCAGTTGAGATCCGCTTGCACTCG 21936 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| || ||||| || ||| | | ||||||| || ||||| || ||| || Sbjct 21935 GGACCAGGAAGCGTAGACCACGGCTACGAGTTTAGTGGCCACGAAGACGTTCGGGAAGCA 21876 Query 162819 CGAAACTATCCCCATCACGGCCAG--TGAGAACATCGGGTCCGCTTTCCTATCTACGTGT 162876 ||| ||| || | || ||| | | | ||||| | ||| || | ||| Sbjct 21875 CGAGGTGATCGCCCTGACTGCCTCCTTAAAAGGCTCGGGA--GACTTCTCGTCAATGTGG 21818 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 |||||||| | ||||||||||||||||||||||| || | ||| || || |||| ||| Sbjct 21817 ACGCAGTACACGTTCTGAGGGGCGTAGATGGCCCTGAGGAGTCTTTCAAAGTTCTCGATC 21758 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAA---CTCAGCCTCCTCGC 162985 || ||||| | ||| |||||||| || ||||| || ||| |||||| || Sbjct 21757 TTCTGGTGGATCACCATAGAATAGGCGATGGGAAAGTTCTCTTCCTCCTTGC 21706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576984806518400