Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq152203 95.1 3e-14 >seq152203 Length=2432022 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| |||||||||| |||| Sbjct 2337571 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGAC 2337512 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| |||||||| || ||||| || Sbjct 2337511 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCGGATCAGCAG 2337452 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||||||| |||||||||| | || || | || |||||| || Sbjct 2337451 AGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAACATC 2337392 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || |||||||| || Sbjct 2337391 CAGAAGGAATCTACTCTGCA 2337372 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| |||||||||| |||| Sbjct 2338255 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGAC 2338196 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || |||||||| || ||||| || Sbjct 2338195 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCGGATCAGCAG 2338136 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||||||| |||||||||| | || || | || ||||| || Sbjct 2338135 AGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAATATC 2338076 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||| || |||||||| ||| | ||| || Sbjct 2338075 CAGAAGGAATCTACTCTGCACTTGGTTCTG 2338046 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| |||||||||| |||| Sbjct 2337799 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGAC 2337740 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || |||||||| || ||||| || Sbjct 2337739 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCGGATCAGCAG 2337680 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||||||| |||||||||| | || || | || |||||| || Sbjct 2337679 AGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAACATC 2337620 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| || || ||||| ||| Sbjct 2337619 CAGAAGGAATCCACTCTGCAC 2337599 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| |||||||||| |||| Sbjct 2338027 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGAC 2337968 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || |||||||| || ||||| || Sbjct 2337967 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCGGATCAGCAG 2337908 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||||||| |||||||||| | || || | || ||||| | Sbjct 2337907 AGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAATATT 2337848 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||| || |||||||| ||| | ||| || Sbjct 2337847 CAGAAGGAATCTACTCTGCACTTGGTTCTG 2337818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||| | || || || |||| Sbjct 2338483 CAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACCCTCGAGGTAGAGCCCAGTGAC 2338424 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || |||||||| || ||||| || Sbjct 2338423 ACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCGGATCAGCAG 2338364 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||||||| |||||||||| | || || | || ||||| || Sbjct 2338363 AGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAATATC 2338304 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||| || |||||||| ||| | ||| || Sbjct 2338303 CAGAAGGAATCTACTCTGCACTTGGTTCTG 2338274 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 || ||| | ||| |||||||| || ||||||| ||| ||||||| || || | ||||| Sbjct 2338046 CAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAAGGTGCGCCCATC 2338105 Query 204820 TTCCAGCTGCTTTCCGGCGAAGAT 204843 |||||||||||||||||| ||||| Sbjct 2338106 TTCCAGCTGCTTTCCGGCAAAGAT 2338129 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 || ||| | ||| |||||||| || ||||||| ||| ||||||| || || | ||||| Sbjct 2338274 CAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAAGGTGCGCCCATC 2338333 Query 204820 TTCCAGCTGCTTTCCGGCGAAGAT 204843 |||||||||||||||||| ||||| Sbjct 2338334 TTCCAGCTGCTTTCCGGCAAAGAT 2338357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178790052319834