Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq152282 98.7 9e-16 seq152203 87.8 2e-12 seq152076 82.4 7e-11 >seq152282 Length=256244 Score = 98.7 bits (108), Expect = 9e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||||| | |||||||||||| ||||| ||| |||| || ||||| | Sbjct 182823 TGTACTCGACGATTTCCGTGCACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGT 182882 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| |||||||| || | ||| ||| ||||||||||||| |||||||| Sbjct 182883 TGCTCTTCCGATTACAAGTGTCCTTGTAGAGCATGTACGGCGTTCCGGTCTC 182934 >seq152203 Length=2432022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||||| || | | || || || || || |||||||| | ||| ||| Sbjct 2338271 GCGCAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAAGGTGCGCCC 2338330 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| | |||| | | ||| ||||| || || ||||||||||| Sbjct 2338331 ATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTT 2338390 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || || | | || | || || | ||||| || |||| || | Sbjct 2338391 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGAT 2338450 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| ||||| | ||||||||||| Sbjct 2338451 GGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2338486 >seq152076 Length=2538501 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| | || || |||||| ||||| || |||| | Sbjct 778798 GACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCA 778857 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| ||||| || || || ||||| |||| Sbjct 778858 AAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACG 778917 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| || || Sbjct 778918 TTCTCAATTGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTC 778977 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 778978 ACGAAGATCTGCATG 778992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475418754523440