Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq152438 120 4e-22 seq152282 93.3 6e-14 >seq1 Length=47594283 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| |||||||| || | ||| || ||||| ||||| |||||||||| || | || | Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||||| |||||||| |||||||||||||| || ||||| |||||||| | Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069 Query 39759 CAACAA 39764 | |||| Sbjct 29602070 CTACAA 29602075 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 39269 CTTTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCTTG-TGACATAACTCCCATT 39325 || || ||||| |||| |||| |||| ||| || || | |||||| ||||||||| Sbjct 29600010 CTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCCATT 29600069 Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 | || ||||| || || | ||||| |||||||| ||||| ||||||||||| || ||| Sbjct 29600070 CTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATGTTT 29600129 Query 39386 TCCATGAAATCAAACGGATT 39405 ||||| || ||||| || || Sbjct 29600130 TCCATAAAGTCAAATGGGTT 29600149 >seq152438 Length=1158950 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| |||| || || | ||| ||||| || || | ||||||||| ||||| | ||| | Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||||||||||||||| ||||| || |||||||| ||||| || || ||||| | Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | ||| || || Sbjct 125036 CAACCACTCTTTCCCC 125021 Score = 111 bits (122), Expect = 2e-19 Identities = 107/136 (79%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| |||| || || | ||| ||||| || | | ||||||||| ||||| | ||| | Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||||||||||||||| ||||| || |||||||| ||||| || || ||||| | Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | ||| || || Sbjct 127965 CAACCACTCTTTCCCC 127950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||||||||| || |||||||| || || |||||||||||||| | ||| |||| Sbjct 116447 CCAAATTTTCATTTACAATTCCATCGCTCGCTGCAAAAAATGCCAAGATATGAGAGATAA 116388 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109 ||||||| || || | | ||| || ||||||| | | ||| ||||||| Sbjct 116387 AATATTTCTCCTCTGATTTCAGCTTGTTCCAGTGAGGAAGATCCTTTGATA 116337 >seq152282 Length=256244 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| ||||| | ||||| |||||||| || || ||||| |||||||| | || Sbjct 176480 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 176539 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCA 68827 || ||||| |||| || || ||||| || ||||||||||| || |||| Sbjct 176540 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| ||||| | ||||| |||||||| || || ||||| |||||||| | || Sbjct 178412 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 178471 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCA 68827 || ||||| |||| || || ||||| || ||||||||||| || |||| Sbjct 178472 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685190205700560