Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 3e-23
seq152438 120 4e-22
seq152282 93.3 6e-14
>seq1
Length=47594283
Score = 123 bits (136), Expect = 3e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| |||||||| || | ||| || ||||| ||||| |||||||||| || | || |
Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||||| |||||||| |||||||||||||| || ||||| |||||||| |
Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069
Query 39759 CAACAA 39764
| ||||
Sbjct 29602070 CTACAA 29602075
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/140 (76%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 39269 CTTTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCTTG-TGACATAACTCCCATT 39325
|| || ||||| |||| |||| |||| ||| || || | |||||| |||||||||
Sbjct 29600010 CTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCCATT 29600069
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
| || ||||| || || | ||||| |||||||| ||||| ||||||||||| || |||
Sbjct 29600070 CTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATGTTT 29600129
Query 39386 TCCATGAAATCAAACGGATT 39405
||||| || ||||| || ||
Sbjct 29600130 TCCATAAAGTCAAATGGGTT 29600149
>seq152438
Length=1158950
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| |||| || || | ||| ||||| || || | ||||||||| ||||| | ||| |
Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||||||||||||||| ||||| || |||||||| ||||| || || ||||| |
Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | ||| || ||
Sbjct 125036 CAACCACTCTTTCCCC 125021
Score = 111 bits (122), Expect = 2e-19
Identities = 107/136 (79%), Gaps = 1/136 (1%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| |||| || || | ||| ||||| || | | ||||||||| ||||| | ||| |
Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||||||||||||||| ||||| || |||||||| ||||| || || ||||| |
Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | ||| || ||
Sbjct 127965 CAACCACTCTTTCCCC 127950
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058
||||||||||||| || |||||||| || || |||||||||||||| | ||| ||||
Sbjct 116447 CCAAATTTTCATTTACAATTCCATCGCTCGCTGCAAAAAATGCCAAGATATGAGAGATAA 116388
Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109
||||||| || || | | ||| || ||||||| | | ||| |||||||
Sbjct 116387 AATATTTCTCCTCTGATTTCAGCTTGTTCCAGTGAGGAAGATCCTTTGATA 116337
>seq152282
Length=256244
Score = 93.3 bits (102), Expect = 6e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| ||||| | ||||| |||||||| || || ||||| |||||||| | ||
Sbjct 176480 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 176539
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCA 68827
|| ||||| |||| || || ||||| || ||||||||||| || ||||
Sbjct 176540 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588
Score = 93.3 bits (102), Expect = 6e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| ||||| | ||||| |||||||| || || ||||| |||||||| | ||
Sbjct 178412 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 178471
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCA 68827
|| ||||| |||| || || ||||| || ||||||||||| || ||||
Sbjct 178472 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685190205700560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |