Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq152438 98.7 8e-16 >seq1 Length=47594283 Score = 116 bits (128), Expect = 3e-21 Identities = 113/143 (79%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| ||||||| ||||| ||||||||||| || || |||||||| |||||||| |||||| Sbjct 29600155 GTAGAAAACCCATTTGACTTTATGGAAAACATCTCATTGGAAGGGAAAACAAATTTTTTT 29600096 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG--AT-AACAAGTGACAATAAA 44605 || || | || |||||||||||| ||||||| || ||| || ||| ||| ||| Sbjct 29600095 GAGAAGAGAGTAGGAGAATATCAGAGAATGGGAGTAATGTCATCTTCAACTGAGAATTCT 29600036 Query 44606 TTTACTACGGATGAAGATTTCTA 44628 |||||| ||||| ||| ||||| Sbjct 29600035 TTTACTTTGGATGCAGACTTCTA 29600013 Score = 113 bits (124), Expect = 4e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || || |||| || || ||||| ||||| || |||||||| || |||||| Sbjct 29604618 CAAGAAGTACAGATAACAGAGGCGCGGTGTTTCTATGGTTTCCAAATTGCTATGGAAAAT 29604559 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || |||||||| |||||||||||||| || || |||||||| ||||| Sbjct 29604558 ATCCATTCGGAGATGTACAGTCTTCTTATTGACACGTACATTAAAGA 29604512 >seq152438 Length=1158950 Score = 98.7 bits (108), Expect = 8e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 ||| | | || ||| || | || || ||||| | ||||||||| || ||||| || |||| Sbjct 125013 ATTATCTAGGGGAAAGAGTGGTTGCCTTTGCGGCTGTGGAAGGAATCTTCTTCTCCGGAT 125072 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | ||||| |||||||||||| | ||||| | ||| | |||||||| || || || || | Sbjct 125073 CCTTTGCTGCCATATTTTGGCTGAAGAAGAGGGGTCTTATGCCTGGATTAACTTTCTCTA 125132 Query 44235 ATGAGTTAATAAGTCGTGATGA 44256 |||| | ||||| || || || Sbjct 125133 ATGAACTCATAAGCCGAGACGA 125154 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || || || ||| | |||||||| || || |||||||| ||||| ||| || || ||| Sbjct 117227 CAGGAGGTGCAAGTTCCAGAAGCTCGCTGCTTTTATGGCTTTCAGATTCTTATCGAGAAT 117286 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| ||||||||||||||| | || |||||||| || ||||||||| Sbjct 117287 GTTCACTCGGAAATGTACAGTTTGCTAATAGATACTTATATCAAAGAT 117334 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || || ||||| | ||||||||| || ||||| || ||||| ||||| Sbjct 127950 GGGGAAAGAGTGGTTGCCTTTGCGGCTGTGGAAGGAATCTTCTTCTCCGGATCCTTTGCT 128009 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| | ||| | |||||||| || | || || ||||| | Sbjct 128010 GCCATATTTTGGCTGAAGAAGAGGGGTCTTATGCCTGGATT-AATTTCTCTAATGAACTC 128068 Query 44243 ATAAGTCGTGATGA 44256 ||||| || || || Sbjct 128069 ATAAGCCGAGACGA 128082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396486455024770