Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 3e-21
seq152438 98.7 8e-16
>seq1
Length=47594283
Score = 116 bits (128), Expect = 3e-21
Identities = 113/143 (79%), Gaps = 3/143 (2%)
Strand=Plus/Minus
Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548
||| ||||||| ||||| ||||||||||| || || |||||||| |||||||| ||||||
Sbjct 29600155 GTAGAAAACCCATTTGACTTTATGGAAAACATCTCATTGGAAGGGAAAACAAATTTTTTT 29600096
Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG--AT-AACAAGTGACAATAAA 44605
|| || | || |||||||||||| ||||||| || ||| || ||| ||| |||
Sbjct 29600095 GAGAAGAGAGTAGGAGAATATCAGAGAATGGGAGTAATGTCATCTTCAACTGAGAATTCT 29600036
Query 44606 TTTACTACGGATGAAGATTTCTA 44628
|||||| ||||| ||| |||||
Sbjct 29600035 TTTACTTTGGATGCAGACTTCTA 29600013
Score = 113 bits (124), Expect = 4e-20
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| || || |||| || || ||||| ||||| || |||||||| || ||||||
Sbjct 29604618 CAAGAAGTACAGATAACAGAGGCGCGGTGTTTCTATGGTTTCCAAATTGCTATGGAAAAT 29604559
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
|| |||||||| |||||||||||||| || || |||||||| |||||
Sbjct 29604558 ATCCATTCGGAGATGTACAGTCTTCTTATTGACACGTACATTAAAGA 29604512
>seq152438
Length=1158950
Score = 98.7 bits (108), Expect = 8e-16
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174
||| | | || ||| || | || || ||||| | ||||||||| || ||||| || ||||
Sbjct 125013 ATTATCTAGGGGAAAGAGTGGTTGCCTTTGCGGCTGTGGAAGGAATCTTCTTCTCCGGAT 125072
Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234
| ||||| |||||||||||| | ||||| | ||| | |||||||| || || || || |
Sbjct 125073 CCTTTGCTGCCATATTTTGGCTGAAGAAGAGGGGTCTTATGCCTGGATTAACTTTCTCTA 125132
Query 44235 ATGAGTTAATAAGTCGTGATGA 44256
|||| | ||||| || || ||
Sbjct 125133 ATGAACTCATAAGCCGAGACGA 125154
Score = 96.9 bits (106), Expect = 3e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|| || || ||| | |||||||| || || |||||||| ||||| ||| || || |||
Sbjct 117227 CAGGAGGTGCAAGTTCCAGAAGCTCGCTGCTTTTATGGCTTTCAGATTCTTATCGAGAAT 117286
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|||| ||||||||||||||| | || |||||||| || |||||||||
Sbjct 117287 GTTCACTCGGAAATGTACAGTTTGCTAATAGATACTTATATCAAAGAT 117334
Score = 89.7 bits (98), Expect = 4e-13
Identities = 101/134 (75%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|| ||| || | || || ||||| | ||||||||| || ||||| || ||||| |||||
Sbjct 127950 GGGGAAAGAGTGGTTGCCTTTGCGGCTGTGGAAGGAATCTTCTTCTCCGGATCCTTTGCT 128009
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
|||||||||||| | ||||| | ||| | |||||||| || | || || ||||| |
Sbjct 128010 GCCATATTTTGGCTGAAGAAGAGGGGTCTTATGCCTGGATT-AATTTCTCTAATGAACTC 128068
Query 44243 ATAAGTCGTGATGA 44256
||||| || || ||
Sbjct 128069 ATAAGCCGAGACGA 128082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396486455024770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |