Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq152438 91.5 2e-13 seq152282 86.0 8e-12 >seq152438 Length=1158950 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| ||| ||||||||||| ||||| | || ||||| ||||||| ||||| Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| ||| || || ||| ||| || || ||||||||||| || |||||| ||| || | Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037 Query 130155 CAA 130157 ||| Sbjct 125036 CAA 125034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| ||| ||||||||||| ||||| | || ||||| ||||||| ||||| Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAAT-CCAGGCATAAGACCCCTCTTCT 128026 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| ||| || || ||| ||| || || ||||||||||| || |||||| ||| || | Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966 Query 130155 CAA 130157 ||| Sbjct 127965 CAA 127963 >seq152282 Length=256244 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||| | ||||||||||||| ||| || || ||||| |||| ||||| || Sbjct 182822 GTGTACTCGACGATTTCCGTGCACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGG 182881 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||||| | |||||||| |||||||| ||||| || |||||||| ||| Sbjct 182882 TTGCTCTTCCGATTACAAGTGTCCTTGTAGAGCATGTACGGCGTTCCGGTCTCCGTCTGG 182941 Query 118872 GA 118873 || Sbjct 182942 GA 182943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616887921512240