Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq154373 95.1 1e-14 seq152438 95.1 1e-14 >seq154373 Length=45528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| | ||| ||||| || ||||| || |||||||| Sbjct 19986 GTGAAGATGTAACGGGGGCTGGCAGAATCTTTGCCCCCGTGGAGCCGGGTGCCAAACTGA 20045 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| | |||||||| ||||||| |||||| || || || |||||||| | | Sbjct 20046 CCGATGGGCTGTAAGAGGTTGACGTTGTTGCTGCCCACAAAGTTTTGTGCCAAATTAATA 20105 Query 152149 ATCGT 152153 || || Sbjct 20106 ATGGT 20110 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||| ||| ||||| || || || || || || || Sbjct 19986 GTGAAGATGTAACGGGGGCTGGCAGAATCTTTGCCCCCGTGGAGCCGGGTGCCAAACTGA 20045 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| |||||||| | ||||||| ||||||||||||||| ||||| || | | Sbjct 20046 CCGATGGGCTGTAAGAGGTTGACGTTGTTGCTGCCCACAAAGTTTTGTGCCAAATTAATA 20105 Query 117425 ATCGT 117429 || || Sbjct 20106 ATGGT 20110 >seq152438 Length=1158950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||| |||||| | |||||| || || | | ||||||||||| || | ||||||| Sbjct 125154 TCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCTTC 125095 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| |||||| ||||| || ||||||||| ||||| ||| ||||||||| Sbjct 125094 AGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCA 125035 Query 74892 AC 74893 || Sbjct 125034 AC 125033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||| |||||| | |||||| || || || ||||||||||| || | ||||||| Sbjct 128082 TCGTCTCGGCTTATGAGTTCATTAGAGAAATTAAT-CCAGGCATAAGACCCCTCTTCTTC 128024 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| |||||| ||||| || ||||||||| ||||| ||| ||||||||| Sbjct 128023 AGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCA 127964 Query 74892 AC 74893 || Sbjct 127963 AC 127962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545846906609200