Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq152305 125 6e-24 seq1 87.8 1e-12 >seq152305 Length=463424 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| || || ||||| || ||||| | ||||| ||||||||||||||||| Sbjct 101676 AGGCCCGTGATATGTGCGATCATATATGTGAGTAATGAGTAACTGGCGATGTTAAAGGGC 101735 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || ||||| |||||||| || || |||||||| ||||| || |||||||| || | | Sbjct 101736 ACTCCGAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAAGAGAGCTCACCATTCAAC 101795 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | || ||||| || || |||||||| || Sbjct 101796 ACATAGAACTGGCAGAGAGCATGGCAAGGGGGCAGAGCCATCAG 101839 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| || || || ||||| ||||||||||| || || || ||||||| || Sbjct 105877 TCATCTCTTTGTATTCGGCACCAAAATGTCTCCACTGGAAGCCATAAACTGGTCCCAAGT 105936 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| || || ||| ||||| ||| |||| ||||| | || || ||||| | Sbjct 105937 CTCCTTCCTCTCTGGAGGTAAAGCCATGCTTATCCAGGAAGTCCCGAGACCCATTGGCAT 105996 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||||| | || || || ||||||| ||||||| |||||||| || Sbjct 105997 CCCAGATCCTCACTCCTTTTGCAGAGAGTTCTTTGGCATTTGTGGAGCC 106045 >seq1 Length=47594283 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| |||| || || |||||| ||| ||||| | | || || || Sbjct 12103591 TTTAGTTCTCTGCTGAGCACTATATTAATTCTGTCTTTCAAAGGTCGACTTTTCTCAGGA 12103532 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| ||||||||||||||| || || || ||| Sbjct 12103531 ATGGAGAACCAGGTCTTCTTACCCATTATCACCAGATTTTGTTTACCT 12103484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405319255806168