Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq152076 105 6e-18 seq171586 96.9 3e-15 >seq152076 Length=2538501 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | || | || || ||| ||| || || || || || || Sbjct 778533 CATGCCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTC 778592 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || ||||| || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 778593 GGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 778652 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || |||||||||| |||||| || | || | | || || || | ||| Sbjct 778653 GGGGATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATTGTGTCACTGGGCTC 778712 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || |||||||| || || || ||||| ||||| Sbjct 778713 TACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 778763 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || || | ||| | || | || || ||| ||| || || || || || |||| Sbjct 778079 AGCCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCGG 778138 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 ||||| || | || |||||||| ||||| ||||| || || | ||||||||||| | Sbjct 778139 AGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAG 778198 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| |||||| |||||| || | || | | || || || | ||| | Sbjct 778199 GGATGCCCTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATTGTGTCACTGGGCTCTA 778258 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||||| | || |||||||| || || || ||||| ||||| Sbjct 778259 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 778307 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | || | || || ||| ||| || || || || || || Sbjct 778305 CATGCCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 778364 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || ||||| || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 778365 GGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 778424 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| |||||| || | || | | || || || | ||| Sbjct 778425 AGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATTGTGTCACTGGGCTC 778484 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 778485 TACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 778535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | || | || || ||| ||| || || || || || || Sbjct 778761 CATGCCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTC 778820 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || ||||| || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 778821 GGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 778880 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| |||||| || | || | | || || || | ||| Sbjct 778881 AGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATTGTGTCACTGGGCTC 778940 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 778941 TACCTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 778991 >seq171586 Length=8203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | || | || || ||| ||| || || || || || || Sbjct 2196 CATGCCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 2255 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || ||||| || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 2256 GGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 2315 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| |||||| || | || | | || || || | ||| Sbjct 2316 AGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATTGTGTCACTGGGCTC 2375 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || |||||||| || || || ||||| ||||| Sbjct 2376 TACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2426 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | || | || || ||| ||| || || || || || || Sbjct 1968 CATGCCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 2027 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || ||||| || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 2028 GGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 2087 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| |||||| || | || | | || || || | ||| Sbjct 2088 AGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATTGTGTCACTGGGCTC 2147 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 2148 TACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428497776396602