Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq152305 140 3e-28
seq1 87.8 1e-12
>seq152305
Length=463424
Score = 140 bits (154), Expect = 3e-28
Identities = 130/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| || || ||||| || ||||| | ||||| ||||||||||||||||||
Sbjct 101676 AGGCCCGTGATATGTGCGATCATATATGTGAGTAATGAGTAACTGGCGATGTTAAAGGGC 101735
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| ||||| |||||||| ||||| |||||||| |||||||| |||||||| || | |
Sbjct 101736 ACTCCGAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAAGAGAGCTCACCATTCAAC 101795
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || ||||| || | |||||||| || || || ||||| |||
Sbjct 101796 ACATAGAACTGGCAGAGAGCATGGCAAGGGGGCAGAGCCATCAGA 101840
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||| ||||||||||| || || || ||||||| |||||| || || ||| |||
Sbjct 105900 AAATGTCTCCACTGGAAGCCATAAACTGGTCCCAAGTCTCCTTCCTCTCTGGAGGTAAAG 105959
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
|| ||| |||| ||||| | || || ||||| ||||||||| | || || || |
Sbjct 105960 CCATGCTTATCCAGGAAGTCCCGAGACCCATTGGCATCCCAGATCCTCACTCCTTTTGCA 106019
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
||||| ||||||| |||||||| ||
Sbjct 106020 GAGAGTTCTTTGGCATTTGTGGAGCC 106045
>seq1
Length=47594283
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || |||||||| |||| || | |||||| ||| ||||| | | || || ||
Sbjct 12103591 TTTAGTTCTCTGCTGAGCACTATATTAATTCTGTCTTTCAAAGGTCGACTTTTCTCAGGA 12103532
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| ||||||||||||||| || || ||||||
Sbjct 12103531 ATGGAGAACCAGGTCTTCTTACCCATTATCACCAGATTTTGTTTACCT 12103484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405172414882444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |