Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq152305 140 3e-28 seq1 87.8 1e-12 >seq152305 Length=463424 Score = 140 bits (154), Expect = 3e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| || || ||||| || ||||| | ||||| |||||||||||||||||| Sbjct 101676 AGGCCCGTGATATGTGCGATCATATATGTGAGTAATGAGTAACTGGCGATGTTAAAGGGC 101735 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| |||||||| ||||| |||||||| |||||||| |||||||| || | | Sbjct 101736 ACTCCGAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAAGAGAGCTCACCATTCAAC 101795 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | |||||||| || || || ||||| ||| Sbjct 101796 ACATAGAACTGGCAGAGAGCATGGCAAGGGGGCAGAGCCATCAGA 101840 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| ||||||||||| || || || ||||||| |||||| || || ||| ||| Sbjct 105900 AAATGTCTCCACTGGAAGCCATAAACTGGTCCCAAGTCTCCTTCCTCTCTGGAGGTAAAG 105959 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||| |||| ||||| | || || ||||| ||||||||| | || || || | Sbjct 105960 CCATGCTTATCCAGGAAGTCCCGAGACCCATTGGCATCCCAGATCCTCACTCCTTTTGCA 106019 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||| ||||||| |||||||| || Sbjct 106020 GAGAGTTCTTTGGCATTTGTGGAGCC 106045 >seq1 Length=47594283 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| |||| || | |||||| ||| ||||| | | || || || Sbjct 12103591 TTTAGTTCTCTGCTGAGCACTATATTAATTCTGTCTTTCAAAGGTCGACTTTTCTCAGGA 12103532 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| ||||||||||||||| || || |||||| Sbjct 12103531 ATGGAGAACCAGGTCTTCTTACCCATTATCACCAGATTTTGTTTACCT 12103484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405172414882444