Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq152438 107 2e-18 seq1 104 2e-17 >seq152438 Length=1158950 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||| ||| || ||||| ||||| || |||||||| ||||| | ||| ||||| || Sbjct 125154 TCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCTTC 125095 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||||||||| || ||||| || || || ||||| || ||||| || || ||||| || Sbjct 125094 AGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCA 125035 Query 4692 AC 4693 || Sbjct 125034 AC 125033 Score = 100 bits (110), Expect = 2e-16 Identities = 96/122 (79%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||| ||| || ||||| ||||| || ||||||| ||||| | ||| ||||| || Sbjct 128082 TCGTCTCGGCTTATGAGTTCATTAGAGAAA-TTAATCCAGGCATAAGACCCCTCTTCTTC 128024 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||||||||| || ||||| || || || ||||| || ||||| || || ||||| || Sbjct 128023 AGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCA 127964 Query 4692 AC 4693 || Sbjct 127963 AC 127962 Score = 82.4 bits (90), Expect = 7e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 4927 TTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 ||||| || || ||||| ||||| || || || || ||||||||||| ||||| | |||| Sbjct 116454 TTTCTTACCAAATTTTCATTTACAATTCCATCGCTCGCTGCAAAAAATGCCAAGATATGA 116395 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || ||||| || | || || | || || || |||||||| || | ||| || | ||| Sbjct 116394 GAGATAAAATATTTCTCCTCTGATTTCAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAG 116335 Query 5046 TCAAC 5050 ||||| Sbjct 116334 TCAAC 116330 >seq1 Length=47594283 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||| || || ||||| || ||||| || | || |||||||| ||||| || || Sbjct 29601952 TCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCTTG 29602011 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || || ||||| || ||||| ||| Sbjct 29602012 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGGCT 29602071 Query 4692 AC 4693 || Sbjct 29602072 AC 29602073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426007865081282