Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 seq152282 105 9e-18 seq152438 96.9 5e-15 >seq1 Length=47594283 Score = 116 bits (128), Expect = 5e-21 Identities = 120/155 (77%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 47793 CTTTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCTTGA-GACATAACTCCCATT 47849 || || ||||| |||| |||| |||| ||| || || || ||||| ||||||||| Sbjct 29600010 CTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCCATT 29600069 Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 | |||||||| || || | ||||| |||||||| ||||| ||||||||||| || ||| Sbjct 29600070 CTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATGTTT 29600129 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||||||| |||||||| || || | ||| |||| Sbjct 29600130 TCCATAAAGTCAAATGGGTTTTCTACTTTAAAAAT 29600164 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || |||||||| || | ||| || ||||| ||||| || ||||||| || | ||| ||| Sbjct 29601952 TCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCTTG 29602011 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| || || ||||| || ||||| || Sbjct 29602012 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGGC 29602070 >seq152282 Length=256244 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||||||||||| ||||| |||||||| || || ||||| |||||||| | || Sbjct 176480 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 176539 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || || ||||| || || ||||| || ||||||||||| || |||| | | || Sbjct 176540 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGGCTG 176599 Query 77247 TTTCTGAGACCAT 77259 || |||| ||||| Sbjct 176600 TTCCTGACACCAT 176612 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||||||||||| ||||| |||||||| || || ||||| |||||||| | || Sbjct 178412 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 178471 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || || ||||| || || ||||| || ||||||||||| || |||| | | || Sbjct 178472 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGGCTG 178531 Query 77247 TTTCTGAGACCAT 77259 || |||| ||||| Sbjct 178532 TTCCTGACACCAT 178544 >seq152438 Length=1158950 Score = 96.9 bits (106), Expect = 5e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||||| ||||||||| ||||| || ||| Sbjct 103313 TACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGG 103254 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||||||||| ||||||| Sbjct 103253 GTACTGGATTGGGAAAATGACAAATC 103228 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| |||||||| |||||||| || || ||||||||||| || | ||| |||| Sbjct 116447 CCAAATTTTCATTTACAATTCCATCGCTCGCTGCAAAAAATGCCAAGATATGAGAGATAA 116388 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633 ||||||| || | || |||| || ||||||| | | ||| ||||||| Sbjct 116387 AATATTTCTCCTCTGATTTCAGCTTGTTCCAGTGAGGAAGATCCTTTGATA 116337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 48390 TTTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 ||||| ||| |||||| | ||||||||||||| | ||| |||||||| ||||||| | Sbjct 117344 TTTTC-TTGGGATCTTTGATATAAGTATCTATTAGCAAACTGTACATTTCCGAGTGAACA 117286 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 || || || |||||||| || ||||| || | ||||||| | || |||||| | Sbjct 117285 TTCTCGATAAGAATCTGAAAGCCATAAAAGCAGCGAGCTTCTGGAACTTGCACCTCCTGA 117226 Query 48510 CAAAATCGTTC 48520 | ||| ||||| Sbjct 117225 CTAAAGCGTTC 117215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692930790762560