Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 5e-21
seq152282 105 9e-18
seq152438 96.9 5e-15
>seq1
Length=47594283
Score = 116 bits (128), Expect = 5e-21
Identities = 120/155 (77%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 47793 CTTTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCTTGA-GACATAACTCCCATT 47849
|| || ||||| |||| |||| |||| ||| || || || ||||| |||||||||
Sbjct 29600010 CTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCCATT 29600069
Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909
| |||||||| || || | ||||| |||||||| ||||| ||||||||||| || |||
Sbjct 29600070 CTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATGTTT 29600129
Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944
|||||||| |||||||| || || | ||| ||||
Sbjct 29600130 TCCATAAAGTCAAATGGGTTTTCTACTTTAAAAAT 29600164
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|| |||||||| || | ||| || ||||| ||||| || ||||||| || | ||| |||
Sbjct 29601952 TCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCTTG 29602011
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | || ||||| ||||||||||| || || ||||| || ||||| ||
Sbjct 29602012 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGGC 29602070
>seq152282
Length=256244
Score = 105 bits (116), Expect = 9e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
|||||||||||||||| ||||| |||||||| || || ||||| |||||||| | ||
Sbjct 176480 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 176539
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
|| || || ||||| || || ||||| || ||||||||||| || |||| | | ||
Sbjct 176540 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGGCTG 176599
Query 77247 TTTCTGAGACCAT 77259
|| |||| |||||
Sbjct 176600 TTCCTGACACCAT 176612
Score = 105 bits (116), Expect = 9e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
|||||||||||||||| ||||| |||||||| || || ||||| |||||||| | ||
Sbjct 178412 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 178471
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
|| || || ||||| || || ||||| || ||||||||||| || |||| | | ||
Sbjct 178472 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGGCTG 178531
Query 77247 TTTCTGAGACCAT 77259
|| |||| |||||
Sbjct 178532 TTCCTGACACCAT 178544
>seq152438
Length=1158950
Score = 96.9 bits (106), Expect = 5e-15
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697
||| ||||| |||||||| || ||||||| ||||| ||||||||| ||||| || |||
Sbjct 103313 TACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGG 103254
Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723
||| |||||||||||||| |||||||
Sbjct 103253 GTACTGGATTGGGAAAATGACAAATC 103228
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582
||||||| |||||||| |||||||| || || ||||||||||| || | ||| ||||
Sbjct 116447 CCAAATTTTCATTTACAATTCCATCGCTCGCTGCAAAAAATGCCAAGATATGAGAGATAA 116388
Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633
||||||| || | || |||| || ||||||| | | ||| |||||||
Sbjct 116387 AATATTTCTCCTCTGATTTCAGCTTGTTCCAGTGAGGAAGATCCTTTGATA 116337
Score = 84.2 bits (92), Expect = 3e-11
Identities = 98/131 (75%), Gaps = 1/131 (1%)
Strand=Plus/Minus
Query 48390 TTTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449
||||| ||| |||||| | ||||||||||||| | ||| |||||||| ||||||| |
Sbjct 117344 TTTTC-TTGGGATCTTTGATATAAGTATCTATTAGCAAACTGTACATTTCCGAGTGAACA 117286
Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509
|| || || |||||||| || ||||| || | ||||||| | || |||||| |
Sbjct 117285 TTCTCGATAAGAATCTGAAAGCCATAAAAGCAGCGAGCTTCTGGAACTTGCACCTCCTGA 117226
Query 48510 CAAAATCGTTC 48520
| ||| |||||
Sbjct 117225 CTAAAGCGTTC 117215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692930790762560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |