Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-18 seq152282 100 4e-16 seq152438 89.7 7e-13 >seq1 Length=47594283 Score = 107 bits (118), Expect = 3e-18 Identities = 109/140 (78%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 46282 CTTTAAAAGTCGACATCTAAAGAAAAATGATTATC--TTCTTG-TGACATAACTCCCATT 46338 || || ||||| |||| |||| |||| ||| || || | |||||| ||||||||| Sbjct 29600010 CTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCCATT 29600069 Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 | || ||||| ||||| | ||||| |||||||| ||||| ||||||||||| || ||| Sbjct 29600070 CTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATGTTT 29600129 Query 46399 TCCATAAAATCAAACGGATT 46418 |||||||| ||||| || || Sbjct 29600130 TCCATAAAGTCAAATGGGTT 29600149 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || |||||||| || | ||| || ||||| |||||||||||||||| || | || ||| Sbjct 29601952 TCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCTTG 29602011 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || || ||||| || || || || Sbjct 29602012 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGGCT 29602071 Query 46774 ACAA 46777 |||| Sbjct 29602072 ACAA 29602075 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || || || || |||||||| || || ||||||||||||||||| | ||| ||||| || Sbjct 29606416 ACCTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTATACATCTGCCAGATATCGTGA 29606475 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTC 47240 || ||||| |||||||| ||||| | | ||||| | ||||| |||||| Sbjct 29606476 TACTGGATAGGAAAAATGACAAAGCGACGCGGATTCTCCTTAAGTAAAGGTTC 29606528 >seq152282 Length=256244 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||||||||||| ||||| |||||||| || || ||||| |||||||| | || Sbjct 176480 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 176539 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || || ||||| || || ||||| || ||||| ||||| || |||| | | || Sbjct 176540 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGGCTG 176599 Query 75842 TTTCTGAGACCAT 75854 || |||| ||||| Sbjct 176600 TTCCTGACACCAT 176612 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||||||||||| ||||| |||||||| || || ||||| |||||||| | || Sbjct 178412 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 178471 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || || ||||| || || ||||| || ||||| ||||| || |||| | | || Sbjct 178472 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGGCTG 178531 Query 75842 TTTCTGAGACCAT 75854 || |||| ||||| Sbjct 178532 TTCCTGACACCAT 178544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||| || ||||| |||||||| | ||||| || || ||| Sbjct 192270 GTGCCAGCATTGAAGAGTGTAGGGGAGGCATGGGTGAACCACCTCTCAGACAGAAGGTTG 192329 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || ||||| | || || |||||| || ||||| || ||||| || | ||| | | Sbjct 192330 TAAGTCTCAATCGCAGCATCGATATCCTCTTCGTGAATCCCCACAGCCACTCTCATTAGC 192389 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||||||||| || Sbjct 192390 ATATGCTGAGGTCGCTC 192406 >seq152438 Length=1158950 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || |||| || || | ||| ||||| || || | |||||||| || || | ||| || Sbjct 125154 TCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCTTC 125095 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| || || || ||||| || ||||| || ||||| |||||||| || || Sbjct 125094 AGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCA 125035 Query 46774 ACAAGTCTCTCTCC 46787 || | ||| || || Sbjct 125034 ACCACTCTTTCCCC 125021 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||||| ||||||||| ||||| || ||| | Sbjct 103313 TACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGG 103254 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| || ||||| ||||||| Sbjct 103253 GTACTGGATTGGGAAAATGACAAATC 103228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711150691601280