Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 3e-18
seq152282 100 4e-16
seq152438 89.7 7e-13
>seq1
Length=47594283
Score = 107 bits (118), Expect = 3e-18
Identities = 109/140 (78%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 46282 CTTTAAAAGTCGACATCTAAAGAAAAATGATTATC--TTCTTG-TGACATAACTCCCATT 46338
|| || ||||| |||| |||| |||| ||| || || | |||||| |||||||||
Sbjct 29600010 CTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCCATT 29600069
Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398
| || ||||| ||||| | ||||| |||||||| ||||| ||||||||||| || |||
Sbjct 29600070 CTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATGTTT 29600129
Query 46399 TCCATAAAATCAAACGGATT 46418
|||||||| ||||| || ||
Sbjct 29600130 TCCATAAAGTCAAATGGGTT 29600149
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|| |||||||| || | ||| || ||||| |||||||||||||||| || | || |||
Sbjct 29601952 TCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCTTG 29602011
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| ||||||||||| || || ||||| || || || ||
Sbjct 29602012 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGGCT 29602071
Query 46774 ACAA 46777
||||
Sbjct 29602072 ACAA 29602075
Score = 87.8 bits (96), Expect = 3e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187
|| || || || |||||||| || || ||||||||||||||||| | ||| ||||| ||
Sbjct 29606416 ACCTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTATACATCTGCCAGATATCGTGA 29606475
Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTC 47240
|| ||||| |||||||| ||||| | | ||||| | ||||| ||||||
Sbjct 29606476 TACTGGATAGGAAAAATGACAAAGCGACGCGGATTCTCCTTAAGTAAAGGTTC 29606528
>seq152282
Length=256244
Score = 100 bits (110), Expect = 4e-16
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
|||||||||||||||| ||||| |||||||| || || ||||| |||||||| | ||
Sbjct 176480 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 176539
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|| || || ||||| || || ||||| || ||||| ||||| || |||| | | ||
Sbjct 176540 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGGCTG 176599
Query 75842 TTTCTGAGACCAT 75854
|| |||| |||||
Sbjct 176600 TTCCTGACACCAT 176612
Score = 100 bits (110), Expect = 4e-16
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
|||||||||||||||| ||||| |||||||| || || ||||| |||||||| | ||
Sbjct 178412 TGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATGGAC 178471
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|| || || ||||| || || ||||| || ||||| ||||| || |||| | | ||
Sbjct 178472 TCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGGCTG 178531
Query 75842 TTTCTGAGACCAT 75854
|| |||| |||||
Sbjct 178532 TTCCTGACACCAT 178544
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | |||||| || ||||| |||||||| | ||||| || || |||
Sbjct 192270 GTGCCAGCATTGAAGAGTGTAGGGGAGGCATGGGTGAACCACCTCTCAGACAGAAGGTTG 192329
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| || ||||| | || || |||||| || ||||| || ||||| || | ||| | |
Sbjct 192330 TAAGTCTCAATCGCAGCATCGATATCCTCTTCGTGAATCCCCACAGCCACTCTCATTAGC 192389
Query 77114 ATATGCTGAGGTCGTTC 77130
|||||||||||||| ||
Sbjct 192390 ATATGCTGAGGTCGCTC 192406
>seq152438
Length=1158950
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|| |||| || || | ||| ||||| || || | |||||||| || || | ||| ||
Sbjct 125154 TCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCTTC 125095
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||||||||| || || || ||||| || ||||| || ||||| |||||||| || ||
Sbjct 125094 AGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCA 125035
Query 46774 ACAAGTCTCTCTCC 46787
|| | ||| || ||
Sbjct 125034 ACCACTCTTTCCCC 125021
Score = 87.8 bits (96), Expect = 3e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||||| ||||||||| ||||| || ||| |
Sbjct 103313 TACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGG 103254
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|| ||||| || ||||| |||||||
Sbjct 103253 GTACTGGATTGGGAAAATGACAAATC 103228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 711150691601280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |