Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq115509 179 4e-40
seq67106 149 7e-31
seq25623 105 7e-18
seq152438 100 3e-16
seq9167 98.7 1e-15
seq1 82.4 8e-11
>seq115509
Length=711
Score = 179 bits (198), Expect = 4e-40
Identities = 172/208 (83%), Gaps = 13/208 (6%)
Strand=Plus/Plus
Query 8422 TTCTCC-TGCCT--CAGCCTCCA-GAGTAGCTGGG-ATTA-CAGG-CAAAAGCCACCACG 8474
|||||| |||| |||||||| |||| ||||| |||| |||| || ||||||| |
Sbjct 23 TTCTCCCTGCCCTCCAGCCTCCTTGAGTGACTGGGGATTAACAGGGCACCTGCCACCATG 82
Query 8475 C---CAAGCT-AATTTTTGTATTTTTAGTAGAGAGAGG-GTTTCACCATGTTGG-CCAGG 8528
| | |||| |||||||| |||||||||||||| | ||||||||||||||| |||||
Sbjct 83 CACCCCAGCTTAATTTTTGCATTTTTAGTAGAGATGGAAGTTTCACCATGTTGGGCCAGG 142
Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588
|||||||| |||||||||||||| ||||||||||| ||| |||||||||| || || |||
Sbjct 143 CTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTTCCTTGGCCTCCCAAGGTTCTAGGA 202
Query 8589 TTACAGGCATGAGCCACCGCGCCTGGCC 8616
||||||| |||||||||| ||||||||
Sbjct 203 TTACAGGTGTGAGCCACCGTGCCTGGCC 230
>seq67106
Length=812
Score = 149 bits (164), Expect = 7e-31
Identities = 125/147 (85%), Gaps = 5/147 (3%)
Strand=Plus/Minus
Query 8475 CCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGG-GTTTCACCA-TGTTGGCCAGG-CTG 8531
|| || ||||||||| |||||||||||||| || ||||||||| ||||||||||| | |
Sbjct 727 CCCAGATAATTTTTGCATTTTTAGTAGAGATGGGAGTTTCACCAATGTTGGCCAGGGCGG 668
Query 8532 GTCTCGAACTCCT-GACC-TCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGAT 8589
||||| ||||||| |||| ||| ||||||||||| ||| |||||||||| || | ||||
Sbjct 667 GTCTCAAACTCCTTGACCCTCAGGTGATCCACCTTCCTTGGCCTCCCAAGGTTTTAGGAT 608
Query 8590 TACAGGCATGAGCCACCGCGCCTGGCC 8616
|||||| |||||||||| ||||||||
Sbjct 607 TACAGGTGTGAGCCACCGTGCCTGGCC 581
>seq25623
Length=605
Score = 105 bits (116), Expect = 7e-18
Identities = 92/113 (81%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408
|| |||||||||||||||||| | |||| || |||| | ||||| |||||| ||||||
Sbjct 455 CTTTGTTGCCCAGGCTGGAGTATAATGGCGTGGTCTCAGGTCACTCCAACCTTTGCCTCC 514
Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGC 8461
| ||||||||| || ||||| ||||| ||||| | || |||||| |||||||
Sbjct 515 CAGGTTCAAGCCATCCTCCTACCTCACCCTCC-CAATACCTGGGACTACAGGC 566
>seq152438
Length=1158950
Score = 100 bits (110), Expect = 3e-16
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 23542 CTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAAT 23601
|| || | ||||||||| || |||||||| ||||| | || | || || | |||||||
Sbjct 125145 CTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCTTCAGCCAAAAT 125086
Query 23602 ATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654
|| |||||||| |||||||| ||||| || || || |||||||||||||| ||
Sbjct 125085 ATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCAAC 125033
Score = 93.3 bits (102), Expect = 4e-14
Identities = 89/113 (79%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 23542 CTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAAT 23601
|| || | ||||||||| || ||||||| ||||| | || | || || | |||||||
Sbjct 128073 CTTATGAGTTCATTAGAGAAA-TTAATCCAGGCATAAGACCCCTCTTCTTCAGCCAAAAT 128015
Query 23602 ATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654
|| |||||||| |||||||| ||||| || || || |||||||||||||| ||
Sbjct 128014 ATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCAAC 127962
>seq9167
Length=560
Score = 98.7 bits (108), Expect = 1e-15
Identities = 91/113 (81%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408
|| |||||||||||||||| | |||| || |||| | ||||| |||||| ||||||
Sbjct 449 CTTTGTTGCCCAGGCTGGATTATTATGGCGTGGTCTCAGGTCACTCCAACCTTTGCCTCC 508
Query 8409 CGGGTTCAAGCTATT-CTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGG 8460
| ||||||||| ||| ||||| | ||||||||| ||||||||||| ||| ||
Sbjct 509 CAGGTTCAAGCCATTCCTCCTACTTCAGCCTCC-CAGTAGCTGGGACTACTGG 560
>seq1
Length=47594283
Score = 82.4 bits (90), Expect = 8e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263
||| || |||||| | |||||||| || || | |||| || ||||||||||| || || |
Sbjct 29600057 CATTACTCCCATTCTCTGATATTCTCCTACTC-TCTTCTCAAAAAAATTTGTTTTCCCTT 29600115
Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATT 23297
| ||||| || ||||||||||| |||||||| ||
Sbjct 29600116 CCAATGAGATGTTTTCCATAAAGTCAAATGGGTT 29600149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 520183276135600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |