Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq115509 179 4e-40 seq67106 149 7e-31 seq25623 105 7e-18 seq152438 100 3e-16 seq9167 98.7 1e-15 seq1 82.4 8e-11 >seq115509 Length=711 Score = 179 bits (198), Expect = 4e-40 Identities = 172/208 (83%), Gaps = 13/208 (6%) Strand=Plus/Plus Query 8422 TTCTCC-TGCCT--CAGCCTCCA-GAGTAGCTGGG-ATTA-CAGG-CAAAAGCCACCACG 8474 |||||| |||| |||||||| |||| ||||| |||| |||| || ||||||| | Sbjct 23 TTCTCCCTGCCCTCCAGCCTCCTTGAGTGACTGGGGATTAACAGGGCACCTGCCACCATG 82 Query 8475 C---CAAGCT-AATTTTTGTATTTTTAGTAGAGAGAGG-GTTTCACCATGTTGG-CCAGG 8528 | | |||| |||||||| |||||||||||||| | ||||||||||||||| ||||| Sbjct 83 CACCCCAGCTTAATTTTTGCATTTTTAGTAGAGATGGAAGTTTCACCATGTTGGGCCAGG 142 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 |||||||| |||||||||||||| ||||||||||| ||| |||||||||| || || ||| Sbjct 143 CTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTTCCTTGGCCTCCCAAGGTTCTAGGA 202 Query 8589 TTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||| |||||||||| |||||||| Sbjct 203 TTACAGGTGTGAGCCACCGTGCCTGGCC 230 >seq67106 Length=812 Score = 149 bits (164), Expect = 7e-31 Identities = 125/147 (85%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 8475 CCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGG-GTTTCACCA-TGTTGGCCAGG-CTG 8531 || || ||||||||| |||||||||||||| || ||||||||| ||||||||||| | | Sbjct 727 CCCAGATAATTTTTGCATTTTTAGTAGAGATGGGAGTTTCACCAATGTTGGCCAGGGCGG 668 Query 8532 GTCTCGAACTCCT-GACC-TCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGAT 8589 ||||| ||||||| |||| ||| ||||||||||| ||| |||||||||| || | |||| Sbjct 667 GTCTCAAACTCCTTGACCCTCAGGTGATCCACCTTCCTTGGCCTCCCAAGGTTTTAGGAT 608 Query 8590 TACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||| |||||||||| |||||||| Sbjct 607 TACAGGTGTGAGCCACCGTGCCTGGCC 581 >seq25623 Length=605 Score = 105 bits (116), Expect = 7e-18 Identities = 92/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 || |||||||||||||||||| | |||| || |||| | ||||| |||||| |||||| Sbjct 455 CTTTGTTGCCCAGGCTGGAGTATAATGGCGTGGTCTCAGGTCACTCCAACCTTTGCCTCC 514 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGC 8461 | ||||||||| || ||||| ||||| ||||| | || |||||| ||||||| Sbjct 515 CAGGTTCAAGCCATCCTCCTACCTCACCCTCC-CAATACCTGGGACTACAGGC 566 >seq152438 Length=1158950 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 23542 CTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAAT 23601 || || | ||||||||| || |||||||| ||||| | || | || || | ||||||| Sbjct 125145 CTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCTTCAGCCAAAAT 125086 Query 23602 ATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654 || |||||||| |||||||| ||||| || || || |||||||||||||| || Sbjct 125085 ATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCAAC 125033 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/113 (79%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 23542 CTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAAT 23601 || || | ||||||||| || ||||||| ||||| | || | || || | ||||||| Sbjct 128073 CTTATGAGTTCATTAGAGAAA-TTAATCCAGGCATAAGACCCCTCTTCTTCAGCCAAAAT 128015 Query 23602 ATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654 || |||||||| |||||||| ||||| || || || |||||||||||||| || Sbjct 128014 ATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCAAC 127962 >seq9167 Length=560 Score = 98.7 bits (108), Expect = 1e-15 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 || |||||||||||||||| | |||| || |||| | ||||| |||||| |||||| Sbjct 449 CTTTGTTGCCCAGGCTGGATTATTATGGCGTGGTCTCAGGTCACTCCAACCTTTGCCTCC 508 Query 8409 CGGGTTCAAGCTATT-CTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGG 8460 | ||||||||| ||| ||||| | ||||||||| ||||||||||| ||| || Sbjct 509 CAGGTTCAAGCCATTCCTCCTACTTCAGCCTCC-CAGTAGCTGGGACTACTGG 560 >seq1 Length=47594283 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 ||| || |||||| | |||||||| || || | |||| || ||||||||||| || || | Sbjct 29600057 CATTACTCCCATTCTCTGATATTCTCCTACTC-TCTTCTCAAAAAAATTTGTTTTCCCTT 29600115 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATT 23297 | ||||| || ||||||||||| |||||||| || Sbjct 29600116 CCAATGAGATGTTTTCCATAAAGTCAAATGGGTT 29600149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520183276135600