Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq152077 168 1e-36 seq152347 152 7e-32 seq91791 100 4e-16 >seq152077 Length=2433926 Score = 168 bits (186), Expect = 1e-36 Identities = 221/306 (72%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 8280 CGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAA 8339 |||| || |||| || | | ||||| |||||||||| |||||| || || | Sbjct 247574 CGGGCACGTGGAAGGCTACATAGGGACAGGTCTTGACGTTGGCACAGACGAGCTTGTGCA 247633 Query 8340 TAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGT 8399 | || |||||||||| ||| || || || |||||||||||||||||||||| Sbjct 247634 GCGAGGCCGTCTTGACGATGTTGAAGCCGGTCTCCCCTCCGAAGGTGCTGGGCTTCCAGT 247693 Query 8400 ACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACT 8459 || | || ||||||||| ||| ||| ||| || ||||||||||| || || || | || Sbjct 247694 ACTCAGGAGAGCAGATGGGGTTACCCAGGAGACCCTTGAGGGAGAAAGGCGCGCCGATCT 247753 Query 8460 CGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGT 8519 ||| |||||||| |||||||||| |||||| || ||| |||| || | || | || Sbjct 247754 CGACCATGCTCTCCCCGAAGATGGAGTTGGGCTGGCACTTCTCCAGCAGCAGCCCCGGGT 247813 Query 8520 ACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTT 8579 | | ||||| ||| |||| ||| ||||| || || |||||||| || |||||| | Sbjct 247814 AGAACTCCAGAGCATCGATGTCACCGTACAGCTCCTGCAGTTCGGCTGCCTTCTCCTGCT 247873 Query 8580 CTCCTG 8585 | |||| Sbjct 247874 CGCCTG 247879 >seq152347 Length=13568040 Score = 152 bits (168), Expect = 7e-32 Identities = 218/307 (71%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 ||| |||| | ||||| || || || || ||||| ||||| | |||| || | ||| Sbjct 9543472 TCGCGAACACTGAACGAGGTGAAGGGGCAGCCCTTCACGTTATTGCAGATCAGCGTCTGG 9543531 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398 | | || | |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 9543532 AGCGAGGCTGTGTTGATGATTTCAAAGCCCACTTCTCCTCCAAAAGTACTAGGCTTCCAG 9543591 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458 || | || || |||||| || ||||||| ||||| ||||||||||| || |||| Sbjct 9543592 TATTCGGGAGAACAGATGGGATTGCCCATGAGCCCTTTCAGGGAGAACGGCGCTCCCAGT 9543651 Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518 || | ||| ||||||| |||||||| || ||||| |||||||||| | | | Sbjct 9543652 TCCACCATGGTCTCACCAAAGATGGCTCCCGGGCGGGGTTTTTCCACCAGAAGAGCAGGA 9543711 Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578 |||||||||| || |||| || ||||| ||||| | |||||||| || || || Sbjct 9543712 TACAGCTCCATCGCATCGATATCGCCGTAGAGGGCTTCCAACTCGGCAGCCATGTCTTTC 9543771 Query 8579 TCTCCTG 8585 || |||| Sbjct 9543772 TCCCCTG 9543778 Score = 150 bits (166), Expect = 3e-31 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || || |||||||||| ||||||| ||| || || || || || | || Sbjct 9546001 ATGAGCCGGGTCGTCTGGAACAAGCGCTCGTCGTCCCACTCCGGGTGCTCCTGCGTAAGG 9546060 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || ||||| | ||||||||||| |||||| || |||||||||||||| ||||| || Sbjct 9546061 ACGTCACACACGCGGTTGTGTTCCCGGAGCCATATCGTGGCGTACATCATCAGCCCGGGG 9546120 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || |||| || ||||| || | |||| || ||||| | | || || Sbjct 9546121 ACCAGGCCGAACACCTCCTGCCCGACGGCGAACCGCAGGTGCTCGGGGATGTGAGGTGGG 9546180 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || ||||| | |||| ||||| || | ||| || |||||||| || ||||||||| Sbjct 9546181 TAAATCATTTCTGCCTGAGTATCTTTCACAGTGGGAGGGTACATTTCTCCATCAATCATC 9546240 Query 9484 T 9484 | Sbjct 9546241 T 9546241 >seq91791 Length=1014 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || || |||||||||| ||||||| ||| || || || || || | || Sbjct 787 ATGAGCCGGGTCGTCTGGAACAAGCGCTCGTCGTCCCACTCCGGGTGCTCCTGCGTAAGG 846 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| ||||| | ||||||||||| |||||| || |||||||| || | |||| || Sbjct 847 ACATCACACACGCGGTTGTGTTCCCGGAGCCATATCATGGCGTACGTCCTTCGCCCGGGG 906 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||| || |||| || || ||||| | | || || ||||| | | || || Sbjct 907 ACCAAGCCGAACACCTCCTGCCCAACAGCGAACCACACGTGCTCGGGGATGTAAGGTGGG 966 Query 9424 TAGATCAT 9431 || ||||| Sbjct 967 TAAATCAT 974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715083228012160