Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq152203 152 1e-31 seq171586 127 5e-24 seq152076 127 5e-24 >seq152203 Length=2432022 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| |||||||| | || || ||||| |||||||||||||| || || ||| Sbjct 2338483 CAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACCCTCGAGGTAGA--GCCCAGTG 2338426 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||| |||| Sbjct 2338425 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCGGATCAGC 2338366 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| |||||||| ||||| |||||||| | || | | || || || Sbjct 2338365 AGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAATA 2338306 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| | ||| || | ||||| Sbjct 2338305 TCCAGAAGGAATCTACTCTGCACTTGGTTCTGCGCCTCAG 2338266 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| || ||||| || ||| Sbjct 2337799 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 2337742 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||| Sbjct 2337741 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCGGATCAGC 2337682 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| |||||||| ||||| |||||||| | || | | || || ||| Sbjct 2337681 AGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAACA 2337622 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || ||||| | || || | |||||| Sbjct 2337621 TCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCCTCAGA 2337581 Score = 140 bits (154), Expect = 8e-28 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| || ||||| || ||| Sbjct 2338255 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 2338198 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||| Sbjct 2338197 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCGGATCAGC 2338138 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| |||||||| ||||| |||||||| | || | | || || || Sbjct 2338137 AGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAATA 2338078 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| | ||| || | ||||| Sbjct 2338077 TCCAGAAGGAATCTACTCTGCACTTGGTTCTGCGCCTCAG 2338038 Score = 136 bits (150), Expect = 9e-27 Identities = 153/203 (75%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| || ||||| || ||| Sbjct 2337571 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 2337514 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| |||| Sbjct 2337513 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCGGATCAGC 2337454 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| |||||||| ||||| |||||||| | || | | || || ||| Sbjct 2337453 AGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAACA 2337394 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 |||| || ||||| || |||||| Sbjct 2337393 TCCAGAAGGAATCTACTCTGCAT 2337371 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| || ||||| || ||| Sbjct 2338027 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 2337970 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||| Sbjct 2337969 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCGGATCAGC 2337910 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| |||||||| ||||| |||||||| | || | | || || || Sbjct 2337909 AGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCTTATCTGACTACAATA 2337850 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || || ||||| || ||||| | ||| || | ||||| Sbjct 2337849 TTCAGAAGGAATCTACTCTGCACTTGGTTCTGCGCCTCAG 2337810 >seq171586 Length=8203 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 2651 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTAGA--GCCCAGTG 2594 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || || || ||||||||||| || ||||| || ||||||| Sbjct 2593 ACACAATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATCCCCCCTGACCAGC 2534 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 2533 AGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCTGACTACAACA 2474 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 2473 TCCAGAAGGAGTCCACTCTGCACCTTGT 2446 >seq152076 Length=2538501 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 778760 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTAGA--GCCCAGTG 778703 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || || || ||||||||||| || ||||| || ||||||| Sbjct 778702 ACACAATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATCCCCCCCGACCAGC 778643 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 778642 AGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCCGACTACAACA 778583 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || ||||| ||||| Sbjct 778582 TTCAGAAGGAGTCCACTCTGCACCTTGT 778555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200644263687876