Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq251882 183 2e-41 seq252517 143 2e-29 seq205975 143 2e-29 >seq251882 Length=196254 Score = 183 bits (202), Expect = 2e-41 Identities = 513/779 (66%), Gaps = 24/779 (3%) Strand=Plus/Minus Query 18586 TGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTT 18645 |||| ||||| |||| || || |||| |||||||| | || || || |||| || | Sbjct 179853 TGCAGGCTCGCTACAGCCTGAGAGATGAGTTTCCTCTGCTGACCACCAAATGTGTATTCT 179794 Query 18646 GGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAAC 18705 ||| ||| || |||| |||||||| |||||| | || || || || | |||||| Sbjct 179793 GGAAGGCTGTTTTGGAGGAGTTGTTGTGGTTTGTTAAGGGATCCACA-ATGCTAAAGAAA 179735 Query 18706 TCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGA 18765 || | | || || | | || ||||| ||||| ||| ||| | | | Sbjct 179734 TCTCTTCCAAGGAAGTGAAAATCTGGGACGCCAGTGGATCCCACAACTTTTTGGACTGTC 179675 Query 18766 ATGGCTTC--CATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAG 18823 || ||| ||| | ||| | || ||| | |||| ||| ||||| ||| |||| Sbjct 179674 TGGGATTCTCCATGAGAGAGGAA--GGAGACTTGGGCCTGGTTTCTGGCTTTCAGCGGAG 179617 Query 18824 ACATTTTGGAGCGGAATATAAAGACTGTCAAT-CAAACTATTTACAGCAAGGAATCGATC 18882 |||||||| || ||||| ||||| ||| ||| || | || | | |||||| || | Sbjct 179616 GCATTTTGGGGCAGAATACAAAGA-TGTGAATTCAGATTACTCAGGCCAAGGAGGAGACC 179558 Query 18883 AGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATAT 18942 | ||||| | || || || ||||| ||||| ||||| | | || |||| || || | Sbjct 179557 AACTGCAGAAGGTGATTGACACAATCAAAACCAACCCCAATGACAGAAGAATCATCATGT 179498 Query 18943 CGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTC 19002 ||||||||||||| ||| | | | |||| || || || || ||| | | | | Sbjct 179497 GTGCTTGGAATCCAAAAGATCTTC---TGATGGCTCTGCCGCCGTGCCACGCCCTCTACC 179441 Query 19003 AGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGG 19062 |||| ||||| | | | | | | || ||||| | ||||| | |||| ||| ||| Sbjct 179440 AGTTGTACGTGGGCAGCAG-CAGCTCTCGTGCCAGCTGTACCAACGTTCGGAGGACTTGG 179382 Query 19063 GCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATG 19122 || | || || | |||||||| || | ||||| || ||||||||||| | | ||| Sbjct 179381 GCTTGGGTGTGCATTTCAACATCGCCAGCTATGCTCTGCTTACCTACATGATCGGGCACA 179322 Query 19123 TTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGA 19182 ||||||| || || | || || || | ||||| ||||||||||||| ||| Sbjct 179321 TTACAGGCCTGAAGCCAGGTGACTTTGTACATAC-------TTTGCACATATTTACCTGA 179269 Query 19183 ATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTA 19242 |||| || | || | ||| | ||||| ||| |||| ||||| | || | Sbjct 179268 ATCACATCAAGGCACTGAAAATTCAGCTTCAGCGAGAACCAAGACCTTACCACAAGCTCA 179209 Query 19243 AAATTATTCGAAA---TGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTG 19299 ||||| ||||||| || |||| || | ||||| ||| || || |||||| || Sbjct 179208 AAATTCTTCGAAAAGTTGAAACA---ATTGATGACTTAAAAGCTGAAGACTTTCAGATTA 179152 Query 19300 ATGGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 | || || ||||| ||| | | |||||||||||| || | ||| | ||||||| Sbjct 179151 AAGGGTACAATCCTTGCCCAACTATTAAAATGGAAATGACTGTCTAAGGTGCTTTTAAA 179093 >seq252517 Length=296032 Score = 143 bits (158), Expect = 2e-29 Identities = 372/564 (66%), Gaps = 10/564 (2%) Strand=Plus/Plus Query 18797 TGGCCCCA-TTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT 18855 ||| |||| |||| ||||| || ||||| || ||||| || ||||| ||||| | | Sbjct 234796 TGGACCCAGTTTATGGCTTTCACTGGAGGCACTTTGGGGCAGAATACAAAGAAATGAATT 234855 Query 18856 CAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAA 18915 || | |||||| |||||| | ||||||||||||| ||| || || ||||| |||| | Sbjct 234856 CAGATTATTTAGGCCAAGGAGTAGATCAGCTGCAAAATGTGATTGACACAATCAAAATCA 234915 Query 18916 ACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGG 18975 || | | | | || |||| || || | ||||||||||| | | | || || | || Sbjct 234916 ACACCAATAACAGAAGAATCATCATGTGTGCTTGGAATCCAGAAACTCTTCCTTTGAAGG 234975 Query 18976 TACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCC 19035 | | ||||| ||||| | || ||||| || | | | |||| || || Sbjct 234976 CCTTGCTGCCATGGCACACCCTCTGCCAGTTCAACATGGTCAGTAGTGAGCGCTCATGTG 235035 Query 19036 AAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATG 19095 | | |||||| | || || | |||| |||||| || || ||||||||| | | |||| Sbjct 235036 AGCTGTACCAGTGGTCAGGAGGAATGGTCCTTGGTGTGCCTTTCAACATTACCAGCTATG 235095 Query 19096 CACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAATTCAT 19154 | ||| |||| || | | ||| | ||||| || ||||| || || || ||| Sbjct 235096 CCAGGCTTGCCTAAATGATCACACATATCACAGG-CTGGAAACCAGGTGACTTTGCACAT 235154 Query 19155 ACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCT 19214 || |||| |||| | || ||||||||||||| || | || | ||| | ||||| Sbjct 235155 ACTTTGGGAGATGAAGATGTTTACTTGAATCACATTAAGGCACTGAAAATTCAGCTTCAG 235214 Query 19215 CGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGAC 19274 || |||| |||||| || | || || ||| ||| || | | || || || Sbjct 235215 TGAGAGCCAAGACCTTTCCCAAAGCATAGCGTTCTTCAAAAAGTTAAAATAATTGACAAC 235274 Query 19275 TTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGAA 19334 || ||| |||||| |||| || || |||| |||| | | ||||||||| Sbjct 235275 TTCAAA-------GCTTTCAGATTGAAGGTTACAATCTTCACCAGACTGTTAAAATGGAA 235327 Query 19335 ATGGCTCTTTAATGGATTTTTAAA 19358 || ||| | ||| | ||||||| Sbjct 235328 ATTGCTGTCTAAGGTGCTTTTAAA 235351 >seq205975 Length=138355 Score = 143 bits (158), Expect = 2e-29 Identities = 491/762 (64%), Gaps = 15/762 (2%) Strand=Plus/Plus Query 18604 TGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAG 18663 || || |||| |||||||| | | || || ||||| || |||| || || |||| | Sbjct 51804 TGGGAGATGAGTTTCCTCTGCTGATCACCAAACGTGTATTCTGGAAGGGTGTTTTGGAGG 51863 Query 18664 AGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATAC 18723 ||||| | ||||||||| || || || || | ||||| ||| | | |||| | Sbjct 51864 AGTTGCTGTGGTTTATCAAGGGATCTACAAATGCTAAAGACCTCTCTTCCAAAGGAGTGA 51923 Query 18724 ACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTC--CATAAAAG 18781 | || | ||| ||||| || | ||| | | || || ||| || |||| Sbjct 51924 AAATCTAGGACGCCACTGGATCCCGCGACTTTTTGGACAGCCTGGGATTCTCCACCAAAG 51983 Query 18782 ACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATA 18841 | || ||| | ||||| |||| || || ||| |||| ||||||||||| ||||| Sbjct 51984 AA-----GGAGACTTGGGCCCGGTTTATGGTTTTCAGGGGAGGCATTTTGGAGCAGAATA 52038 Query 18842 TAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGA 18901 ||||| | | ||| | || ||| ||| || || |||||||||| || || || Sbjct 52039 CAAAGATAGGAATTCAGATTACTTAGGCCAACGAGAAGACCAGCTGCAAAAGGTGATTGA 52098 Query 18902 TACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGA 18961 ||||| ||||| ||||| | || |||| || || | ||||||||||||| || Sbjct 52099 CACAATCAAAACCAACCCCAACTATAGAAGAATCATCATTTGTGCTTGGAATCCAAAAGA 52158 Query 18962 TATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGG 19021 | | || | || | || | ||||| ||| | || || ||||| | | | | | | Sbjct 52159 TCTTCCTCTGATAATGCTGCTGCCATGCCACGCCTTCTGCCAGTTCTCCAGGGGCAGCAG 52218 Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081 ||| | || ||||| | |||||| || || || |||||||| || | || ||||| Sbjct 52219 TGAGCTCTCGTGCCAGCTGTACCAGCAGTCAGGAGACATGGGCCTCGGCCTGCCTTTCAA 52278 Query 19082 CATTGCTGGAT--ATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC 19139 || | | | || || | | || ||| | || || | | || || || | Sbjct 52279 CACACCGCCAACCACGCCCTGCGCAACTGCATGATCGCACACATCAGGGGCCTGAAGCCA 52338 Query 19140 GGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTA 19199 || || || | ||||| |||| |||||||| |||||| |||||| || || || | Sbjct 52339 GGTGACTTTGTGCATACTTTGGGAGATGCACAAATTTACCGGAATCACATTGAAGCACTG 52398 Query 19200 AAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGT- 19258 ||| | ||||| ||| | | |||||| | || |||||| | |||| || Sbjct 52399 AAAATTCAGCTGCAGCGAGAATCGAGACCTTTCCACAAGCTCAAAATTCTAAGAAAAGTT 52458 Query 19259 --AACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAc 19316 |||| || ||| || ||| || || |||||| |||| | || ||||| || Sbjct 52459 GAAACA---ATTGACGGGTTCAAAGCTGAAGACTTTCAGGTTGAAGAGTACAATCCTCAT 52515 Query 19317 cccccccTAAAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 | | | ||||||||||||||| | || |||||||| Sbjct 52516 CTGACTGTTAAAATGGAAATGGCTGTCCAAACTGTTTTTAAA 52557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398193842112780