Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq258149 286 4e-72 seq259139 138 1e-27 seq6729 114 2e-20 seq258303 86.0 8e-12 >seq258149 Length=965683 Score = 286 bits (316), Expect = 4e-72 Identities = 266/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||||||| ||||||||||| | | | | ||| | ||||| |||||||||||||| Sbjct 909928 AGCAGGGCCTCTATGTCGGGCTCGATGTCGATGGTAGGAAAGCGGCGGCTGTACCTGCGC 909869 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| ||||||| |||||||||||||||||||| || ||||||||| Sbjct 909868 ACAGGCACACCGTCGCGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCGG 909809 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || ||||||| ||| ||||| ||||||||| Sbjct 909808 CACACGGGAGACCAGATGATGAACTTGGGGTCGGTCATGAGCGCAGAGGGGTCGTCGCTG 909749 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| |||||||||||||||| |||||| ||||| || || || ||| ||||| ||| Sbjct 909748 GGCGCGGGCAGGGCCTCTCGTAAGAAGGCAAAGAGGGGGTGCGCTTGTGCGCCGTTCACC 909689 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | ||||| ||||| || ||| || || ||||||| ||| Sbjct 909688 TCGCACTTCTCGAAGAGAGTGAAGTTGGGCTCAAACCCGCCTCCCGGTCGGACGTACTTG 909629 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||| || |||||| | |||| |||||| ||||| Sbjct 909628 AGAGAATTCAGGATCTCTTCGTTCTTGGCGTTCTCCTG 909591 Score = 201 bits (222), Expect = 1e-46 Identities = 183/230 (80%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| |||||||| ||||| ||||| | ||| |||| Sbjct 909316 CCTGATGCCCGAACTGGTTGCACGGGAAGCCAAGCACGACCAGGCCCCGGGGTCCGAGGC 909257 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| ||||||||||| ||| | |||||||| ||| | |||||||| ||||| | Sbjct 909256 GCCGCTGCAGATCGTTCATCTGGGTGAAGTCCCGGACGGTGGTGCCTCAGAGCGACGCCA 909197 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||||||||||| ||| |||||| | |||| | ||||||||| || || |||| Sbjct 909196 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGCGAGCCCAGGCTCACAGGCTCCCCGCCGG 909137 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATC---TGGTCTCTGCCGCG 83617 | |||||| || ||||| | || ||| || | || | |||||||| Sbjct 909136 CCAGCGGGCGAGCCGAGAACGAGTGCACCGAGCGCTGGGCCGCTGCCGCG 909087 >seq259139 Length=779456 Score = 138 bits (152), Expect = 1e-27 Identities = 228/327 (70%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 83138 ACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATG 83197 ||||||||| ||||||| |||||||| ||||||| ||||||||| ||| |||| ||| Sbjct 619438 ACCAAGAACCTCTCGAAATTCCAGGCGACGTCGTGGCGGCACACGGGAAGACAGGTGATG 619497 Query 83198 AGCTGGGGGTCGCTCACGAG-CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCG 83256 |||| ||||| || ||| | | ||| | ||||| | ||| |||| | | || Sbjct 619498 AGCTTGGGGTGTGTCGTGAGGCAGGGGCATCT--TCGCTGGACGCGGGCAACACTGCCCG 619555 Query 83257 TAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCAT 83316 ||||||| |||||| |||||| ||| || || ||||| ||| || ||||||| | Sbjct 619556 CTGGAAGGCCAAGAGCTAGTGTGCCTGTGCGCCATTCACCTCACACAGCTGGAAGAGCGT 619615 Query 83317 AAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGC 83376 ||||| ||| | | ||| || || ||| || | ||| || ||||| Sbjct 619616 GAAGTTGGGCCTGCACCCGCCTCCCGGTGCAACGGATTTGGGAGAACTCAGCATCTCTTT 619675 Query 83377 ATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCC 83436 |||| ||| ||||| | ||||||||||| |||||| || ||||| ||||| || Sbjct 619676 GTTCTTGGCAGACTCCTGAAGCCCGAACTGGTTGTGCGGGAAGCCGAGCACAACCAGGCC 619735 Query 83437 CCGAGCTCCTAGGCGCCGCTGCAGCTC 83463 | | | || ||||||||| ||| ||| Sbjct 619736 CAGGGACCCGAGGCGCCGCGGCATCTC 619762 >seq6729 Length=138825 Score = 114 bits (126), Expect = 2e-20 Identities = 188/266 (71%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || | | Sbjct 91240 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTCC 91298 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || ||||| || || |||||||||| || ||| | ||||||| Sbjct 91299 TGGTGCACCTCTTCCCCGAGCTTTTCACCCACGAGAACCTGCGCAAGCAATACAACTGCA 91358 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | || |||| ||||| Sbjct 91359 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCTCCCGCATCAAGCTGATCCGCCACTAC 91417 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| ||||| |||| | ||||| ||| Sbjct 91418 GTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGTGGGC 91477 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 91478 AAGCTGGACGAGCGCTGCCGGCGCCG 91503 >seq258303 Length=39348 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 83495 CCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTC 83554 |||||||| ||||| |||||||||||||||| ||| |||||| | |||| | |||| Sbjct 17796 CCTCAGAGCGACGCCACGTTCTCGATGAGCAGCACCTTGCCCCGCAGCGAGCCCAGGCTC 17737 Query 83555 ACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTACACAGATC---TGGTCTCT 83611 ||||| || || |||| | |||||| || ||||| | || ||| || | || | || Sbjct 17736 ACAGGCTCCCCGCCGGCCAGCGGGCGAGCCGAGAACGAGTGCACCGAGCGCTGGGCCGCT 17677 Query 83612 GCCGCG 83617 |||||| Sbjct 17676 GCCGCG 17671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606749081523360