Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq251882 125 5e-24 seq205975 109 4e-19 seq261394 95.1 8e-15 >seq251882 Length=196254 Score = 125 bits (138), Expect = 5e-24 Identities = 492/764 (64%), Gaps = 20/764 (3%) Strand=Plus/Plus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 || |||| ||| |||||| || | ||| |||| || || || | || ||| Sbjct 179106 TAGACAGTCATTTCCATTTTAATAGTTGGGCAAGGATTGTACCCTTTAATCTGAAAGTCT 179165 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTG-TTG-GGAAAG 97015 | ||||| || |||||||| | | ||| |||| | | | ||| | | ||| || ||| Sbjct 179166 TCAGCTTTTAAGTCATCAATTGTTTCAACTTTTC--GAAGAATTTTGAGCTTGTGGTAAG 179223 Query 97016 GCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAG 97075 | || || |||| |||||| | | || || | |||||||||| ||||| || | Sbjct 179224 GTCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGCCTTGATGTGATTCAGGTAAATATGTG 179283 Query 97076 CATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATAC 97135 || |||| || | ||| || || || | | || | || ||||||| Sbjct 179284 CA-------AAGTATGTACAAAGTCACCTGGCTTCAGGCCTGTAATGTGCCCGATCATGT 179336 Query 97136 AAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATC 97195 | || | |||| |||||| || ||||| ||| |||| || | |||| || | || | Sbjct 179337 AGGTAAGCAGAGCATAGCTGGCGATGTTGAAATGCACACCCAAGCCCAAGTCCTCCGAAC 179396 Query 97196 TTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGAC 97255 ||| || | ||| || || |||| | | ||| || ||||| | | || | Sbjct 179397 GTTGGTACAGCTGGCACGAGAGCTGCTGCTGCC-CACGTACAACTGGTAGAGGGCGTGGC 179455 Query 97256 AGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTC 97315 | || |||| ||||| ||| |||| ||||||||||||||| | ||||||| Sbjct 179456 ACGGCGGCAGAGCCATCA---GAAGATCTTTTGGATTCCAAGCACACATGATGATTCTTC 179512 Query 97316 TATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTC 97375 | || | ||||| || | || || | ||| | || || | ||| || | |||| | Sbjct 179513 TGTCATTGGGGTTGGTTTTGATTGTGTCAATCACCTTCTGCAGTTGGTCTCCTCCTTGGC 179572 Query 97376 CACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCAT 97435 | |||| || | | ||| |||||||| ||||||||||||| || || ||| Sbjct 179573 CTGAGTAATCTGAATTCACATCTTTGTATTCTGCCCCAAAATGCCTCCGCTGAAAGCCAG 179632 Query 97436 AAA-CAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGAC 97494 ||| |||| |||| ||||||||| ||||| |||| || || || ||| || Sbjct 179633 AAACCAGGCCCAA-GTCTCCTTCCTCTCTCATGGAGAATCCCAGACAGTCCAAAAAGTTG 179691 Query 97495 CTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTT-GCTGTCAGT 97553 |||||| | || ||||| || | ||| | | | | ||||| || | || Sbjct 179692 TGGGATCCACTGGCGTCCCAGATTTTCACTTCCTTGGAAGAGATTTCTTTAGCATT--GT 179749 Query 97554 AGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGT 97613 ||||| | | |||||||||||| || |||| |||| | |||| ||||| | || || Sbjct 179750 GGATCCCTTAACAAACCACAACAACTCCTCCAAAACAGCCTTCCAGAATACACATTTGGT 179809 Query 97614 TGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCA 97657 || | |||||||| || | | | |||||| | || ||||| Sbjct 179810 GGTCAGCAGAGGAAACTCATCTCTCAGGCTGTAGCGAGCCTGCA 179853 >seq205975 Length=138355 Score = 109 bits (120), Expect = 4e-19 Identities = 438/688 (64%), Gaps = 5/688 (1%) Strand=Plus/Minus Query 96961 GCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTG 97020 ||||| || | ||||| | | ||| ||||| || || || | ||||||| || Sbjct 52481 GCTTTGAACCCGTCAATTGTTTCAACTTTTCTTAGAATTTTGAGCTTGTGGAAAGGTCTC 52422 Query 97021 GGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCT 97080 | |||| ||||| | | || || |||||||||||| ||||| || |||||| Sbjct 52421 GATTCTCGCTGCAGCTGAATTTTCAGTGCTTCAATGTGATTCCGGTAAATTTGTGCATCT 52362 Query 97081 CCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTT 97140 || ||||| || | ||| || || || | | ||| || |||||||| || | Sbjct 52361 CCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCCCCTGATGTGTGCGATCATGCAGTTG 52302 Query 97141 AATAGAGAATAGCTAGCAATGT--TAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTT 97198 || | | | | || ||| | ||||||| || || ||||| || |||| | Sbjct 52301 CGCAGGGCGTGGTTGGCGGTGTGTTGAAAGGCAGGCCGAGGCCCATGTCTCCTGACTGCT 52242 Query 97199 GATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGG 97258 | || | ||| || || |||| | | | | ||||| | || | || || | Sbjct 52241 GGTACAGCTGGCACGAGAGCTCACTGCTGCCCCTGGAGAACTGGCAGAAGGCGTGGCATG 52182 Query 97259 GGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTAT 97318 | ||| | || |||| |||| |||||||||||| || | |||||||||| Sbjct 52181 GCAGCAGCATTATCAGAGGAAGATCTTTTGGATTCCAAGCACAAATGATGATTCTTCTAT 52122 Query 97319 CGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCAC 97378 | | ||||| || | || || | ||| | || | | || || | | || || Sbjct 52121 AGTTGGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGCTGGTCTTCTCGTTGGCCTA 52062 Query 97379 CATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAA 97438 |||| || | ||| |||||||||||||||||||||| || || ||||||| Sbjct 52061 AGTAATCTGAATTCCTATCTTTGTATTCTGCTCCAAAATGCCTCCCCTGAAAACCATAAA 52002 Query 97439 CAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAG 97498 | || || | ||||||||||| | |||| || || | || ||| || | | Sbjct 52001 CCGGGCCCAAGTCTCCTTCTT---TGGTGGAGAATCCCAGGCTGTCCAAAAAGTCGCGGG 51945 Query 97499 ATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATC 97558 ||||| | || ||| | || | ||| || | | || ||||| | ||||||| Sbjct 51944 ATCCAGTGGCGTCCTAGATTTTCACTCCTTTGGAAGAGAGGTCTTTAGCATTTGTAGATC 51885 Query 97559 CTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTA 97618 | |||||||||||| ||| || |||| |||||| |||| ||||| | || || | | Sbjct 51884 CCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAATACACGTTTGGTGATCA 51825 Query 97619 AGAGAGGAAAATCCTTTTCTAAGCTGTA 97646 |||||||| || | | | | |||||| Sbjct 51824 GCAGAGGAAACTCATCTCCCAGGCTGTA 51797 >seq261394 Length=468452 Score = 95.1 bits (104), Expect = 8e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 97397 CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 |||| |||||||| |||||||||||||| || || |||||||| || || | |||||||| Sbjct 97237 CTTGGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCCAAGTCTCCTT 97296 Query 97457 CTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAA 97516 ||||||| |||| || || | || ||| || | |||||||| |||||||| | Sbjct 97297 CTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCGCGGGATCCATTGGCATCCCAGA 97356 Query 97517 TGTGCACACC 97526 | | ||| || Sbjct 97357 TTTTCACTCC 97366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345646735309880