Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq93685 132 4e-26 seq254768 123 2e-23 seq78631 114 1e-20 seq249408 109 5e-19 seq260417 107 2e-18 seq243700 105 6e-18 seq237447 105 6e-18 seq261730 100 2e-16 seq256153 93.3 4e-14 seq43725 93.3 4e-14 seq263758 82.4 7e-11 >seq93685 Length=1386 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| || |||||| |||||| Sbjct 593 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGGCCATCCTCC 652 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| ||||||| | |||||| || || || ||||||||||| || Sbjct 653 AGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 712 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 713 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 772 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||||||| || || || || ||||||||| || Sbjct 773 CCGGTCAGGGTCTTCACGAAGATCTGCATGCCT 805 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || || || || || ||||||||||| | |||||| ||| || Sbjct 1049 ACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 1108 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || ||||||||||| || Sbjct 1109 AGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 1168 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 1169 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1228 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||| || || || || ||||||||| || Sbjct 1229 CCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 1261 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || || || || || ||||||||||| | |||||| || Sbjct 817 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCGTC 876 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| ||||||| | |||||| || || || ||||||||||| || Sbjct 877 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 936 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| || ||| ||||| | ||| | || Sbjct 937 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 996 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| ||||| || || || || ||||||||| || Sbjct 997 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 1033 >seq254768 Length=650996 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| || |||||| |||||| Sbjct 217993 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGGCCATCCTCC 218052 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || | |||||| || || || ||||||||||| || Sbjct 218053 AGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 218112 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 218113 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 218172 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||| || || || || ||||||||| || Sbjct 218173 CCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 218205 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || || || || || ||||||||||| | |||||| ||| || Sbjct 218221 ACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 218280 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || ||||||||||| || Sbjct 218281 AGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 218340 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 218341 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 218400 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 218401 CCAGTCAGGGTCTTCACGAAGATCTGCAT 218429 >seq78631 Length=346750 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 179185 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 179244 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | ||||||||| ||||| Sbjct 179245 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 179304 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || ||| || | ||| | || |||| | || || Sbjct 179305 AATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAAC 179364 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | ||||| || ||||| |||||||| ||||||||||| Sbjct 179365 CTCAAGAGTGATGGTTTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 179412 >seq249408 Length=399222 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 143608 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 143667 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | ||||||||| ||||| Sbjct 143668 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 143727 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || ||| || | ||| | || |||| | || || Sbjct 143728 AATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAAC 143787 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || || || ||||| |||||||| ||||||||||| Sbjct 143788 CTCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 143835 >seq260417 Length=1194950 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||| || ||||| |||||| Sbjct 432368 ACCAGGTGCAGGGTGGACTCTTTCTGTATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 432309 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| | | |||||| || || || ||||| ||||||||| Sbjct 432308 AGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 432249 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||||| ||| | || || Sbjct 432248 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTC 432189 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||||||||| Sbjct 432188 CCAGTCAGGGTCTTCACGAAAATCTGCAT 432160 >seq243700 Length=14829 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | | | || ||||| |||||||||||||| || | Sbjct 8898 ACCACCACGAAGTCTCAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCACA 8839 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || || ||||| ||||| |||| || | ||||||||| ||||| Sbjct 8838 CAAAGTACTTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 8779 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || ||| || | ||| | || |||| | || || Sbjct 8778 AATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAAC 8719 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | |||| | | || ||||| |||||||| ||||||||||| Sbjct 8718 CTCAAGAGTCATGATCTGTCCCGTCAGGGTTTTTACGAAAATCTGCAT 8671 >seq237447 Length=29837 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| ||| Sbjct 13459 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 13400 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || ||| || || || |||||||| |||| || | ||||||||| ||| | Sbjct 13399 TAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGATG 13340 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || ||| || | ||| || ||| | || || Sbjct 13339 AATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTGTTGTACCCGAGGGTTCAAC 13280 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || || || ||||| |||||||||||||||||||| Sbjct 13279 CTCAAGAGTGATGGTCTTTCCTGTCAGGGTTTTTACAAAAATCTGCAT 13232 >seq261730 Length=739691 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 78754 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 78695 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || || || || || || ||||| |||| || | ||||||||| ||||| Sbjct 78694 CAAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 78635 Query 118631 TATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 || | ||||| | |||| || || ||| || | ||| | || |||| | || | Sbjct 78634 AATTGCTTCCTTATCCTGT-ATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGATCAA 78576 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || || || ||||| |||||||| |||||||| || Sbjct 78575 CCTCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTTACGAAAATCTGTAT 78527 >seq256153 Length=874984 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 118515 CCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA 118574 || || | ||||||||| | || | || ||||| |||||||||||||| || || | Sbjct 311667 CCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAA 311726 Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 || || ||| || || || || ||||| |||| || | ||||||| | ||||| || Sbjct 311727 GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAATT 311786 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 | ||||| || || || ||| || | ||| | || |||| | || |||| Sbjct 311787 CTTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTCA 311846 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || || || ||||| |||||||| ||||||||||| Sbjct 311847 AGAGTGATGGTCTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 311890 >seq43725 Length=1898 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || ||||| ||| || Sbjct 1330 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 1271 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| | | |||||| || || || ||||||||||||||| Sbjct 1270 AGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1211 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || |||||| || ||| ||||| | ||| | ||||| Sbjct 1210 ATCTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTTTTA 1151 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||| ||||| |||||||| Sbjct 1150 CCCGTTAAGGTTTTCACAAAGATCTGCAT 1122 >seq263758 Length=155273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||||||||| ||||||||||| || ||||| || || Sbjct 104920 ACCAGGTGCAGAGTGGACTCTTTTTGGATGTTGTAATCAGACAGAGTGCAGCCGTCTTCC 104861 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||| || || ||| | ||||| | |||||| ||||| || ||||| ||||| || Sbjct 104860 AGCTACTTCCCTGCGAAAATGAGCCTCTGCTGGTCGGG-GGGATGCCTTCCTTATCCTGC 104802 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | | || |||||| || ||| ||||| | || | | ||| Sbjct 104801 ATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGATCTTG 104742 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || ||||| ||||||||| Sbjct 104741 TTGGTCACGGTCTTCACAAAGATCTGCATG 104712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432407670014128