Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq263927 104 4e-17 >seq263927 Length=651112 Score = 104 bits (114), Expect = 4e-17 Identities = 105/133 (79%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||||||||| ||||| ||||||||| | || ||||| Sbjct 446268 GCATTTTTTGGAGCCCAGATTAATTCTTTTATACATGTGATTATGTACTCATACTATGGG 446209 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||| |||||||| ||||||||||| || || || | Sbjct 446208 TTAACTGCATTTGG-CCCATGGATTCAG-AAGTATCTCTGGTGGAAACGATACCTGACCA 446151 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 446150 TGCTGCAGCTGGT 446138 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| ||| | |||| ||||| | |||| ||||| | || || ||||| || || Sbjct 447761 GATAGCTGCAGCTCTGTGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACAGT 447702 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||||| || || ||||| ||| || || || ||| || || ||||||||||| | Sbjct 447701 GTTTTTTATCCTAAGGAAGAAAAACAACCAAGTGTCTTTCCTTCATGTATATCATCACTG 447642 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || |||||||| | | ||||| || ||||| ||| |||| || || || Sbjct 447641 CACAATGTTTACATTGTGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 447591 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 ||||||||| | | || || || || || |||| |||| | |||||||| || || Sbjct 443863 CAGTTCCATGTGACCATTGGGCACACAGCATTGTCTCTTTATACTGATTGCCCCTTCCCC 443804 Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308 |||||||| || ||| | | ||| |||| | || ||||||||||| || ||| ||| Sbjct 443803 AAATGGATGCACTGGGCTCTGATTGCCTATGCAATCAGTTTCATATTTCTCTTTCTTAAT 443744 Query 52309 TTCTATTTTAGAACATACAA 52328 |||||| || | |||||||| Sbjct 443743 TTCTATGTTCGGACATACAA 443724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920091581403360