Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq250489 104 3e-17 seq261297 102 9e-17 seq260417 102 9e-17 seq259402 98.7 1e-15 seq250217 95.1 1e-14 seq262957 91.5 2e-13 seq249408 87.8 2e-12 seq78631 87.8 2e-12 seq263758 82.4 9e-11 >seq250489 Length=40374 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4438 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4497 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 4498 ATACTAACGAGGATT 4512 >seq261297 Length=436841 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 195686 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 195745 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 195746 ATACTAACGAGGAATG 195761 >seq260417 Length=1194950 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 417026 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 416967 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 416966 ATACTAACGAGGAGTG 416951 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 406065 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 406006 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 406005 ATACTAACGAGGA 405993 >seq259402 Length=62883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 24034 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 24093 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 24094 TACTAACGAGGA 24105 >seq250217 Length=729188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 435423 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 435482 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 435483 TACTAACGAGGA 435494 >seq262957 Length=47518 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 2527 TTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 2586 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 2587 CTATACTAACGAGGA 2601 >seq249408 Length=399222 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | ||| |||||||||||| ||||| |||| || ||| || | || Sbjct 143623 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 143682 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 143683 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 143742 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || ||| | | | | || || | ||| || || | |||||||| Sbjct 143743 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 143802 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || ||||| || || |||||||| Sbjct 143803 CTTTCCCGTCAGGGTTTTTACGAAAATCTGCATTTT 143838 >seq78631 Length=346750 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | ||| |||||||||||| ||||| |||| || ||| || | || Sbjct 179200 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 179259 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 179260 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 179319 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || ||| | | | | || || | ||| || || | |||||||| Sbjct 179320 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 179379 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| || || ||||| || || ||||| || Sbjct 179380 TTTTCCCGTCAGGGTTTTTACGAAAATCTGCATCTT 179415 >seq263758 Length=155273 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| |||| ||| ||| ||||| || |||||||||| |||||| | || Sbjct 104926 CGCAGGACCAGGTGCAGAGTGGACTCTTTTTGGATGTTGTAATCAGACAGAGTGCAGCCG 104867 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||| ||| || ||||| ||||| | ||||||||||| || | || ||||| Sbjct 104866 TCTTCCAGCTACTTCCCTGCGAAAATGAGCCTCTGCTGGTCGG-GGGGATGCCTTCCTTA 104808 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| || || || | || | ||||| || | ||||| || | | |||| Sbjct 104807 TCCTGCATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGGGATG 104748 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||| || | ||||| |||||||| ||||| Sbjct 104747 ATCTTGTTGGTCACGGTCTTCACAAAGATCTGCAT 104713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569894262911520