Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq259686 95.1 2e-14 seq250175 95.1 2e-14 seq260357 91.5 2e-13 seq258939 91.5 2e-13 seq252703 89.7 8e-13 seq249408 89.7 8e-13 seq243700 89.7 8e-13 seq237447 89.7 8e-13 seq78631 89.7 8e-13 seq251325 86.0 9e-12 seq80414 86.0 9e-12 >seq259686 Length=587844 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 439381 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCATGTTCTGGCTTGGCTGCAAAACACTTCA 439322 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || ||||| |||||||||||||| || || | |||| Sbjct 439321 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 439262 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | | ||| | ||| | | || | || ||| |||| | || | || | Sbjct 439261 TTAATTTTGGCACAGAAAAGTTTGAAGTGAAAAAGGGTGATCGAATTGCACAGCTGATTT 439202 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 439201 GTGAACGCATTTTTTATCCAGAAAT 439177 >seq250175 Length=443462 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 398019 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 398078 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || ||||| |||||||||||||| || || | |||| Sbjct 398079 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 398138 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | | ||| | ||| | | || | || ||| |||| | || | || | Sbjct 398139 TTAATTTTGGCACAGAAAAGTTTGAAGTGAAAAAGGGTGATCGAATTGCACAGCTGATTT 398198 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 398199 GTGAATGCATTTTTTATCCAGAAAT 398223 >seq260357 Length=355543 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 322230 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 322289 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || ||||| |||||||||||||| || || | |||| Sbjct 322290 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 322349 Query 10549 TTAAT 10553 ||||| Sbjct 322350 TTAAT 322354 >seq258939 Length=866247 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| ||||||| |||| | |||| || ||| ||| | || | Sbjct 407330 TTCCTGCTGGATGTTATGGAAGATTAACTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 407271 Query 10489 TT-GATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTA 10547 || ||| | |||||||| || || || |||||||||||||||||||| || || | || Sbjct 407270 TTAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTA 407211 Query 10548 TTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGA-GATAGAATATCTCAATTAAT 10606 ||||| | || ||||| ||| | | || | |||| ||| |||| | | | || Sbjct 407210 CTTAATTTTGGCAAAGAAGAGTTTGAAGTGAA-AAAGGATGATCGAATCGCATAGCTGAT 407152 Query 10607 ATGTGAA-AAAATTTTATATCCTAAAAT 10633 |||||| | | |||| ||||| |||| Sbjct 407151 TTGTGAACAGATTTTTTTATCCAGAAAT 407124 >seq252703 Length=225757 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| ||||||||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 208398 TTCCTTCTGGATGTTATAGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 208457 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || ||||| |||||||||||||| || || | |||| Sbjct 208458 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 208517 Query 10549 TTAATCATTCTAATGAAGATTTTATAAT-AAATAGAGGAGATAGAATATCTCAATTAATA 10607 ||||| | | ||| | ||| | | ||| || || ||| |||| | || | || Sbjct 208518 TTAATTTTGGCACAGAAAAGTTTGAAGTGAAAGAG-GGTGATCGAATTGCACAGCTGATT 208576 Query 10608 TGTGAAAAAATTTTATATCCTAAAAT 10633 |||||| ||||| ||||| |||| Sbjct 208577 TGTGAACGCATTTTTTATCCAGAAAT 208602 >seq249408 Length=399222 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 143609 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 143667 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||| |||||||| ||||| Sbjct 143668 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 143727 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 143728 AATTCCTTCCTTATCCTG 143745 >seq243700 Length=14829 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | | | | ||| || || ||| || || || || || | Sbjct 8897 CCACCACGAAGTCTCAACACAAGAAGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCACA 8839 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| || | ||| || | |||||| |||||||| |||| ||| |||||||| ||||| Sbjct 8838 CAAAGTACTTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 8779 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 8778 AATTCCTTCCTTATCCTG 8761 >seq237447 Length=29837 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 13458 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCGGA 13400 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||| ||| |||||||| ||| | Sbjct 13399 TAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGATG 13340 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 13339 AATTCCTTCCTTATCCTG 13322 >seq78631 Length=346750 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 179186 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 179244 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||| |||||||| ||||| Sbjct 179245 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 179304 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 179305 AATTCCTTCCTTATCCTG 179322 >seq251325 Length=352111 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 311078 CCACCATGAAGTCTCAACACAATATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 311136 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||| || ||||| ||||| Sbjct 311137 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGG 311196 Query 146170 AATTCCTTCTTTAT 146183 |||||||||||||| Sbjct 311197 AATTCCTTCTTTAT 311210 >seq80414 Length=59647 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| |||| ||||||| | || | || ||| ||| | || | Sbjct 2997 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCATGTTCCGGCTTGGCTGCAAAACACTTCA 2938 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || ||||| |||||||||||||| | || | |||| Sbjct 2937 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTAGTGTTGTGTTAT 2878 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 || || | | ||| | ||| | | || | |||||| |||| | || | || | Sbjct 2877 TTGATTTTGGCACAGAAAAGTTTGAAGTGAAAAAGGGAGATCGAATTGCACAGCTGATTT 2818 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 2817 GTGAACGCATTTTTTATCCAGAAAT 2793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025511777280