Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq251882 187 2e-42 seq252517 158 1e-33 seq205975 156 3e-33 seq256613 100 2e-16 >seq251882 Length=196254 Score = 187 bits (206), Expect = 2e-42 Identities = 502/763 (66%), Gaps = 16/763 (2%) Strand=Plus/Minus Query 20015 TGCAATCTCGATATAACTTGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTT 20074 |||| |||| || | | ||||| |||| ||||| | | || || ||| | ||||| | Sbjct 179853 TGCAGGCTCGCTACAGCCTGAGAGATGAGTTTCCTCTGCTGACCACCAAATGTGTATTCT 179794 Query 20075 GGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGC 20134 |||| | ||| | || ||||| || |||||| |||| ||||| |||| | ||| || Sbjct 179793 GGAAGGCTGTTTTGGAGGAGTTGTTGTGGTTTGTTAAGGGATCCACAA-TGCTAAAGAAA 179735 Query 20135 TTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCA 20194 | || | ||| || || ||| ||| |||||| | | ||||| || | Sbjct 179734 TCTCTTCCAAGGAAGTGAAAATCTGGGACGCCAGTGGATCCCACAACTTTTTGGACTGTC 179675 Query 20195 ATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGAC 20254 ||||| || | | || || || ||||| | || | ||| ||||| |||| | Sbjct 179674 TGGGATTCTCCATGAGAGAGGAAGGAGACTTGGGCCTGGTTTCTGGCTTTCAGCGGAGGC 179615 Query 20255 ATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAAT 20314 ||||||| || ||||| || |||| || |||| | || ||||||| ||| ||| Sbjct 179614 ATTTTGGGGCAGAATACAAAGATGTGAATTCAGATTACTCAGGCCAAGGAGGAGACCAAC 179555 Query 20315 TACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCG 20374 | || || || ||| | ||| ||||| ||||| || ||||||||||| || | || | Sbjct 179554 TGCAGAAGGTGATTGACACAATCAAAACCAACCCCAATGACAGAAGAATCATCATGTGTG 179495 Query 20375 CCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAAT 20434 | ||||| | |||||| | | | |||||| |||| || || || || | ||| | Sbjct 179494 CTTGGAATCCAAAAGAT---CTTCTGATGGCTCTGCCGCCGTGCCACGCCCTCTACCAGT 179438 Query 20435 TTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGAC 20494 | |||| || | | | | ||||| || |||| ||||| || | || |||| Sbjct 179437 TGTACG-TGGGCAGCAGCAGCTCTCGTGCCAGCTGTACCAACGTTCGGAGGACTTGGGCT 179379 Query 20495 TGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTA 20554 ||||||| | |||||| || || || ||||| |||||||| || ||||| | || ||| Sbjct 179378 TGGGTGTGCATTTCAACATCGCCAGCTATGCTCTGCTTACCTACATGATCGGGCACATTA 179319 Query 20555 CAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATC 20614 ||| | || | |||||||| || || || | || ||||||||||| |||| Sbjct 179318 CAGGCCTGAAGCCAGGTGACTTTGTACATACTTT-------GCACATATTTACCTGAATC 179266 Query 20615 ATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCA 20674 | || | | | ||| | ||| | ||| |||||| || | || | || | Sbjct 179265 ACATCAAGGCACTGAAAATTCAGCTTCAGCGAGAACCAAGACCTTACCACAAGCTCAAAA 179206 Query 20675 TTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTT 20734 || ||||| ||| || ||| | || || |||||||| || ||| | | |||| | Sbjct 179205 TTCTTCGAAAAGTTGAAACAATTGATGACTTAAAAGCTGAAGACTTTCAGATTAAAGGGT 179146 Query 20735 ATAATCC--CCATAATTCAATTCCAATGGAAATGTCTGTTTAA 20775 | ||||| | || | ||| |||||||||| |||| ||| Sbjct 179145 ACAATCCTTGCCCAA--CTATTAAAATGGAAATGACTGTCTAA 179105 >seq252517 Length=296032 Score = 158 bits (174), Expect = 1e-33 Identities = 362/546 (66%), Gaps = 7/546 (1%) Strand=Plus/Plus Query 20230 CCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAAT 20289 || || ||||| ||||| ||||| || ||||| || ||||| || ||||| || || Sbjct 234801 CCAGTTTATGGCTTTCACTGGAGGCACTTTGGGGCAGAATACAAAGAAATGAATTCAGAT 234860 Query 20290 TATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCA 20349 ||||| || |||||||||||||| | |||||||| ||| | ||| |||| ||| | Sbjct 234861 TATTTAGGCCAAGGAGTAGATCAGCTGCAAAATGTGATTGACACAATCAAAATCAACACC 234920 Query 20350 AACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTG 20409 || |||||||||| || | || || ||||| | || | | ||||| | ||| ||| Sbjct 234921 AATAACAGAAGAATCATCATGTGTGCTTGGAATCCAGAAACTCTTCCTTTGAAGGCCTTG 234980 Query 20410 CCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATG 20469 | ||||| || | || ||||| || || | | | || ||| || ||| | || Sbjct 234981 CTGCCATGGCACACCCTCTGCCAGTTCAACATGGTCAGTAGTGAGCGCTCATGTGAGCTG 235040 Query 20470 TATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTG 20529 || || | || | | |||| || ||||| |||||||| ||| | || ||||| | Sbjct 235041 TACCAGTGGTCAGGAGGAATGGTCCTTGGTGTGCCTTTCAACATTACCAGCTATGCCAGG 235100 Query 20530 CTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATA 20589 ||| | || ||||| ||||| | |||| | ||| | |||||||| | || || | Sbjct 235101 CTTGCCTAAATGATCACACATATCACAGGCTGGAAACCAGGTGACTTTGCACATACTTTG 235160 Query 20590 GGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAA 20649 ||||| | || ||||| | ||||| || | | | ||| | ||| | || | Sbjct 235161 GGAGATGAAGATGTTTACTTGAATCACATTAAGGCACTGAAAATTCAGCTTCAGTGAGAG 235220 Query 20650 CCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAA 20709 |||| || ||||||| | | || || || || |||||| ||| || | || ||| Sbjct 235221 CCAAGACCTTTCCCAAAGCATAGCGTTCTTCAAAAAGTTAAAATAATTGACAACTTCAAA 235280 Query 20710 GCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCAATGGAAATGTCT 20769 || ||| | | |||||||| |||| || | | || ||||||||| || Sbjct 235281 GC-------TTTCAGATTGAAGGTTACAATCTTCACCAGACTGTTAAAATGGAAATTGCT 235333 Query 20770 GTTTAA 20775 || ||| Sbjct 235334 GTCTAA 235339 >seq205975 Length=138355 Score = 156 bits (172), Expect = 3e-33 Identities = 480/741 (65%), Gaps = 5/741 (1%) Strand=Plus/Plus Query 20033 TGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAG 20092 || || |||| ||||| | | | || ||||| ||||| ||||| || ||| | || | Sbjct 51804 TGGGAGATGAGTTTCCTCTGCTGATCACCAAACGTGTATTCTGGAAGGGTGTTTTGGAGG 51863 Query 20093 AGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTA 20152 |||| | |||||||| || ||||| |||||| ||| || || |||||||| | Sbjct 51864 AGTTGCTGTGGTTTATCAAGGGATCTACAAATGCTAAAGACCTCTCTTCCAAAGGAGTGA 51923 Query 20153 AGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTC 20212 | || | | ||| |||||| | ||||| ||||| ||||| || | Sbjct 51924 AAATCTAGGACGCCACTGGATCCCGCGACTTTTTGGACAGCCTGGGATTCTCCACCA--- 51980 Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || || ||||| || || ||||| ||||| |||| ||||||||||| ||||| Sbjct 51981 AAGAAGGAGACTTGGGCCCGGTTTATGGTTTTCAGGGGAGGCATTTTGGAGCAGAATACA 52040 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 || | ||| || |||| || || ||| ||| ||| || | ||||| || ||| | Sbjct 52041 AAGATAGGAATTCAGATTACTTAGGCCAACGAGAAGACCAGCTGCAAAAGGTGATTGACA 52100 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 ||| ||||| ||||| ||| | |||||||| || | || || ||||| | |||||| Sbjct 52101 CAATCAAAACCAACCCCAACTATAGAAGAATCATCATTTGTGCTTGGAATCCAAAAGATC 52160 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 | ||| | || ||| ||||| || | ||||| || | | | | | || Sbjct 52161 TTCCTCTGATAATGCTGCTGCCATGCCACGCCTTCTGCCAGTTCTCCAGGGGCAGCAGTG 52220 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCA--A 20510 | | ||||| || |||| || | || | || ||||| || || | ||||||| | Sbjct 52221 AGCTCTCGTGCCAGCTGTACCAGCAGTCAGGAGACATGGGCCTCGGCCTGCCTTTCAACA 52280 Query 20511 TATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGG 20570 | || | | || |||| | | ||||| ||||| | | | | || | || Sbjct 52281 CACCGCCAACCACGCCCTGCGCAACTGCATGATCGCACACATCAGGGGCCTGAAGCCAGG 52340 Query 20571 TGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAA 20630 |||||| || || || | ||||| || || ||||||| ||||| || ||| | | || Sbjct 52341 TGACTTTGTGCATACTTTGGGAGATGCACAAATTTACCGGAATCACATTGAAGCACTGAA 52400 Query 20631 ATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAA 20690 | | ||| | ||| || | | || |||| | || ||| ||| ||| | Sbjct 52401 AATTCAGCTGCAGCGAGAATCGAGACCTTTCCACAAGCTCAAAATTCTAAGAAAAGTTGA 52460 Query 20691 AGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTC 20750 | ||| ||| || |||||||| || ||| | | |||| || ||||| ||| | Sbjct 52461 AACAATTGACGGGTTCAAAGCTGAAGACTTTCAGGTTGAAGAGTACAATCCTCATCTGAC 52520 Query 20751 AATTCCAATGGAAATGTCTGT 20771 || |||||||||| |||| Sbjct 52521 TGTTAAAATGGAAATGGCTGT 52541 >seq256613 Length=638245 Score = 100 bits (110), Expect = 2e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 20242 TTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAA 20301 ||||| ||||| ||||| || | |||| | | ||||| ||| ||||| || ||| Sbjct 438998 TTTCAGTGGAGTCATTTCGGGACAGAATGTAGAAAGATGAATTCAAGTTATTCAGGTCAA 439057 Query 20302 GGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGA 20361 |||||||| || | | || |||||| || | | |||| ||||| || ||||||||| Sbjct 439058 GGAGTAGACAAACTGCTGAAGGTTATTGATACAGTCAAAAACAACCCCAAGGACAGAAGA 439117 Query 20362 ATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCAT 20421 || || | || || | ||| | |||| | | ||||| ||||| | ||||||||||||| Sbjct 439118 ATCATCATGTGTGCTTAGAATCCAAAAGCTCTCCCTTTGATGGCATCGCCTCCATGTCAT 439177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397874891540380