Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq257400 145 2e-29 seq253961 125 1e-23 seq262852 122 2e-22 seq260499 116 7e-21 seq250257 114 3e-20 seq252796 84.2 4e-11 >seq257400 Length=867372 Score = 145 bits (160), Expect = 2e-29 Identities = 297/439 (68%), Gaps = 7/439 (2%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || ||||| ||||| ||||||||||||||| ||| | || |||||||| |||||| Sbjct 654274 GTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCCATCTTCTGG 654215 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | || | ||||||| ||||| | |||||||| | ||| || || Sbjct 654214 CTTAAGAAACGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAT 654155 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | |||||||| ||| | |||| ||| | | || | | || Sbjct 654154 GAGGGTTTACACTGTGACTTTGCCTGCCTCATGTTCAAACA---CCTGCTTCACAAACCT 654098 Query 102098 TC--AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 || || ||| || | ||||| | | | || || | || ||||| || || | Sbjct 654097 TCGGAACAGAGAG--TAAAAGAAATAATTATCAATGCTGTTAGGATAGAACAGGAGTTCC 654040 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | || | || ||||||| || | | |||||||| |||| || |||| ||||||| Sbjct 654039 TTACGGAGGCCTTGCCTGTCAAGCTGATTGGAATGAATTGCACTTTAATGAAGCAGTACA 653980 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 ||||||| |||||||| | ||| || | ||| |||| | ||| | | || Sbjct 653979 TTGAATTCGTGGCAGACAGACTTATGCTGGAACTGGGTTTCAGCAAGGTTTTCAGAGTGG 653920 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335 || ||||| || ||||| |||||||| || || ||||| ||||| ||||| | Sbjct 653919 AGAATCCCTTTGACTTTATGGAGAATATTTCGCTGGAAGGGAAGACAAACTTCTTTGAGA 653860 Query 102336 AGAGAGTCGCCGAGTATCA 102354 ||||||| | ||||||||| Sbjct 653859 AGAGAGTAGGCGAGTATCA 653841 >seq253961 Length=405542 Score = 125 bits (138), Expect = 1e-23 Identities = 295/441 (67%), Gaps = 12/441 (3%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| ||||| ||||||||||||||| |||| | || |||||||| |||| Sbjct 310544 TTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATCTTCT 310485 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | ||||||| ||||| | |||||||| | ||| || | Sbjct 310484 GGCTCAAGAAATGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAG 310425 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 | || ||| | || | |||||||| ||| | |||| ||| | | || | | | Sbjct 310424 ATGAGGGTTTACACTGTGACTTTGCCTGCCTCATGTTTAAACA---CCTGCTTCACAAAC 310368 Query 102096 CATC--AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | || ||| ||||| | ||||| | | | || || | || ||||| | || Sbjct 310367 CTTCGGAAG-GAAAG--TAAAAGAAATAATTATCAATGCTGTTAGGATAGAACAGGCGTT 310311 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 || | | || ||| ||| || | |||||||||| |||| || |||| ||||| Sbjct 310310 CCTTATGGGGGCCTTGCTTGTCAAGCTGATGGGAATGAATTGCACTTTAATGAAGCAGTA 310251 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 ||||||||| ||||||| ||| || | ||| |||| | ||| | | || Sbjct 310250 CATTGAATTCGTGGCAG----ACTTATGCTGGAACTGGGTTTCAGCAAGGTTTTCAGAGT 310195 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 | | ||| || ||||| |||||||| | || ||||| ||||| ||||| Sbjct 310194 GCAGAGTCTCTTTGACTTTATGGAGAATATTTCACAGGAAGGGAAGACAAACTTCTTTGA 310135 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 |||||||| | | ||||||| Sbjct 310134 GAAGAGAGTAGGCAAGTATCA 310114 >seq262852 Length=263465 Score = 122 bits (134), Expect = 2e-22 Identities = 292/439 (67%), Gaps = 7/439 (2%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| ||||| ||||||||||||||| ||| | || | |||||| |||||| Sbjct 13175 GTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGGATCCATCTTCTGG 13116 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| || | | ||||| ||||| | ||||||| | ||| || || Sbjct 13115 CTCAAGAAACAAGGACTGATACCTGGCCTCACATTTGCCAATGAACTTATTAGCAGAGAT 13056 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || |||||||||| ||| | | || ||| | | || | | || Sbjct 13055 GAGGGTTTACACTGCGACTTTGCCTGCCTCATATTCAAACA---CCTGCTTCACAAACCT 12999 Query 102098 T--CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 | |||||| || | ||||| | | || | || | || ||||| || || | Sbjct 12998 TTGGAAGAGAGAG--TAAAAGAAATAATTATCAAATCTGTTAGGATAGAACAGGAGTTCC 12941 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | |||| || ||||||| || | | |||||||| || | || |||| ||||||| Sbjct 12940 TTACAGAGGCCTTGCCTGTCAAGCTGATTGGAATGAATTGTACTTTAATGAAGCAGTACA 12881 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 ||||| | ||||||| | ||| || | ||| |||| | ||| | | || Sbjct 12880 TTGAACTCATGGCAGACAGACTTATGCTGGAACTGGGTTTCAGCAAGGTTTTCAGAGTGG 12821 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335 || ||||| || ||||| || ||||| || || |||||||| || ||||| | Sbjct 12820 AGAATCCCTTTGACTTTATGGAGAAAATTTCACTGGAAGGGAAGACCAATTTCTTTGAGA 12761 Query 102336 AGAGAGTCGCCGAGTATCA 102354 ||||||| | ||||||||| Sbjct 12760 AGAGAGTAGGCGAGTATCA 12742 >seq260499 Length=1869696 Score = 116 bits (128), Expect = 7e-21 Identities = 292/441 (66%), Gaps = 12/441 (3%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| ||||| ||||||||||||||| ||| | || ||||| || |||| Sbjct 725616 TTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCGATCTTCT 725675 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 | ||||||| || || | ||||||| ||||| | |||||||| ||| || | Sbjct 725676 GTCTCAAGAAAAGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACCTATTAGCAGAG 725735 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 | || ||| | || || ||||||| ||| | |||| ||| | | || | | | Sbjct 725736 ATGAGGGTTTACACTGCAACTTTGCCTGCCTCATGTTCAAACA---CCTGCTTCACAAAC 725792 Query 102096 CATC--AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | || || ||| || | ||||| | | | || || |||| ||||| || || Sbjct 725793 CTTCAGAACAGACAG--TAAAAGAAATAATTATCAATGCTGTTAGAATAGAACAGGAGTT 725850 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 || | | |||||| || | |||||||| |||| || |||| ||||| Sbjct 725851 CCT-----TATGAAGGCCTGTGAAGCTGAATGGAATGAATTGCACTTTAATGAAGCAGTA 725905 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 |||||| ||||||||||||| ||| || | ||| |||| | ||| | | || Sbjct 725906 CATTGAGTTTGTGGCAGATAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGGGT 725965 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 || || || || ||||| |||||||| || || || || ||||||||||| Sbjct 725966 CGAGAATCCGTTTGACTTTATGGAGAATATTTCACTGGAAGGAAATACAAACTTTTTTGA 726025 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 ||||| || | ||||||| Sbjct 726026 GAAGAGGGTAGGTAAGTATCA 726046 >seq250257 Length=281617 Score = 114 bits (126), Expect = 3e-20 Identities = 289/437 (66%), Gaps = 12/437 (3%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| ||||| ||||||||||||||| || | || |||||||| |||||| || Sbjct 103583 GCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGACTCTTTTGCATCCATCTTCTGGCTC 103524 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || | ||||||| ||||| | |||||||| | ||| || || ||| Sbjct 103523 AAGAAATGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAA 103464 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT-- 102098 ||| | || || | | ||| | | | |||| ||| | | || | | || | Sbjct 103463 GGTTTACACTGCAAGTCTGCCTACCTCATGTTCAAACA---CCTGCTTCACAAGCCTTTG 103407 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 || ||| || | ||||| | | | || || | || ||||| || || || | Sbjct 103406 GAACAGAGAG--TAAAAGAAATAATTATCAATGCTGTTAGGATAGAACAGGAGTTCCTTA 103349 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 | || ||||||| || | | |||||||| |||| || |||| |||||||||| Sbjct 103348 TGGAGGCCTTGCCTGTGAAGCTGATTGGAATGAATTGCACTTTAATGAAGCAGTACATTG 103289 Query 102219 AATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCA 102278 |||| |||||||| | ||| | | ||| |||| | ||| | | || | Sbjct 103288 AATTCGTGGCAGACAGACTTAGGCTGGAACTGGGTTTCAGCAAGGTTTTCAGAGTGGAGA 103229 Query 102279 ACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGA 102338 | ||||| || | ||| |||||||| | | ||||||||||| ||||| |||| Sbjct 103228 ATCCCTTTGACTTTACGGAGAATATTTCGTTGG-----AAGACCAACTTCTTTGAGAAGA 103174 Query 102339 GAGTCGCCGAGTATCAA 102355 ||| | |||||||||| Sbjct 103173 GAGCAGGCGAGTATCAA 103157 >seq252796 Length=435546 Score = 84.2 bits (92), Expect = 4e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 101922 CCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGC-ATCCATTTTCTGGATC 101980 ||| ||| ||||| ||||| |||| |||| |||| | || || || || |||||| || Sbjct 281647 CCTCTGCAGCAGTAGAAGGGATCTCCTTTTCTGGTTCTTTTGCCATTGATCTTCTGGCTC 281588 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || | ||||||| ||||| | |||| ||| || ||| || || || Sbjct 281587 AAGAAACGTGGACTGATGCCTGGCCTCACATTTTCCAGTGAATTTATTAGCAGAGATGAG 281528 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAA 102076 ||| | || |||||||||||||| | |||| ||| Sbjct 281527 GGTTTACACTGCGACTTTGCATGCCTCATGTTCAAA 281492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 986172271855220