Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq257400 131 1e-25 seq253961 102 6e-17 seq48835 82.4 5e-11 >seq257400 Length=867372 Score = 131 bits (144), Expect = 1e-25 Identities = 377/568 (66%), Gaps = 43/568 (8%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| ||||| || | || || |||||||| | |||||||||||||||| | || Sbjct 654673 ATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGATCTTTCCAAGGAC 654614 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGT---TCATGTCTCACATA 22461 | | || ||| ||| |||| || ||||| || | | || || || | Sbjct 654613 ATTCAGCACTGG---GAAGCCCTGA---AGCCTGAGGAGAGATATTTTATATCACATGTT 654560 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 || || ||||||||| ||| |||||||| ||| || ||| | ||| || |||| Sbjct 654559 CTAGCTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTT 654503 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || || ||| || | ||| |||||||| | ||||||||| || || | || || Sbjct 654502 AGCCAA-GAAGTTCAG---ATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCAT 654447 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 |||||| |||||| | |||||||||| || || || ||| | | |||||| Sbjct 654446 GGAAAACATACATTCCGAAATGTATAGTCTCCTTATCGACACTTACAT---TAAAGATTC 654390 Query 22636 --AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 || ||| || | |||| ||| |||| ||||| || || || ||||| Sbjct 654389 CAAAGAAAGGGAATTTCTCTTCAATGCAATTGAAACGATGCCTTGCGTAAAGAAGAAGGC 654330 Query 22692 ACAGTGGGC--TGCACAATGGCTGAAT--GCCACACATAAGT---CTATCGCAACACGTC 22744 | | ||||| ||| | || || | ||| | ||| |||| | | |||| Sbjct 654329 AGACTGGGCCTTGC------GTTGGATTGGGGACAAAGAAGCTACCTATGGAGA-ACGTG 654277 Query 22745 TCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCT 22804 || | || ||||| || || ||||| || | |||||||| || ||||| |||| |||| Sbjct 654276 TCGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCCATCTTCT 654217 Query 22805 GGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTG 22864 |||| |||||||| | ||||| || | | |||||||| || | |||||| | | Sbjct 654216 GGCTTAAGAAACGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAG 654157 Query 22865 ACGAAGGTCTACACTGTGACTTTGCTTG 22892 | || ||| |||||||||||||||| || Sbjct 654156 ATGAGGGTTTACACTGTGACTTTGCCTG 654129 >seq253961 Length=405542 Score = 102 bits (112), Expect = 6e-17 Identities = 374/573 (65%), Gaps = 32/573 (6%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| ||||| || | | || |||||||| | |||||||||||||||| | || Sbjct 310940 ATGTATAAGAAAGCTGAGTCTTCCTTTTGGACAGCTGAGGAGGTGGATCTTTCCAAGGAC 310881 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGC-TGAGCGCAGG---TTCATGTCTCACAT 22460 | | || || ||| | |||| || |||| || || || || || | Sbjct 310880 ATTCAGCACTGT---GAA-----GCCCGAAGCCTGAGGAGAGAGATTTTATATCACATGT 310829 Query 22461 ACTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATT 22516 || || |||||||| ||| |||||||| ||| | ||| | ||| || ||| Sbjct 310828 TCTAGCTGTCTTTGCA---GCAAGTGATGGCATAGTAAATCAAAACTTGGTGGAGCTATT 310772 Query 22517 TCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAA 22576 | || || ||| || | ||| | |||||| | |||||||| || || | || | Sbjct 310771 TAGCCAA-GAAGTTCAG---ATTACGGAAGCCTGCTGCTTCTATGGCTTCCAAATTGCCA 310716 Query 22577 TGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATT-AGTAGCTAAAGAG 22635 ||||||| || ||| |||||||||||| || || || | ||| | | || | | Sbjct 310715 TGGAAAACATGCATTCTGAAATGTATAGTCTCCTTATCAACACTTACATTAACGATTCCA 310656 Query 22636 AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCAC 22693 || ||| || | |||| ||| |||| ||||| || || || |||||| Sbjct 310655 AAGAAAGGGAATTTCTCTTCAATGCAATTGAAACAATGCCTTGCGTAAAGAAGAAGGCAG 310596 Query 22694 AGTGGGCTGCACAATGGCTGAATGCCACACATAAGT---CTATCGCAACACGTCTCTTGG 22750 | ||||| || ||| | | ||| | |||| |||| | | || | | | | Sbjct 310595 ACTGGGCCTTGCATTGGATTG--GGAACAAAGAAGTTACCTATGGAGA-ACATGTTGTAG 310539 Query 22751 CCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGA 22810 ||||||| || || ||||| || | |||||||| || ||||| |||| |||||||| | Sbjct 310538 CCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATCTTCTGGCTCA 310479 Query 22811 AGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAG 22870 ||||| | | ||||| || | | |||||||| || | |||||| | || || | Sbjct 310478 AGAAATGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGG 310419 Query 22871 GTCTACACTGTGACTTTGCTTGTATGCTGTTTA 22903 || |||||||||||||||| || | |||||| Sbjct 310418 GTTTACACTGTGACTTTGCCTGCCTCATGTTTA 310386 >seq48835 Length=336802 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||| | ||||| | | || || || || ||||| || ||||||||| Sbjct 232485 TGGCCTTTGCTGCTCTAGAAGGTATTTTTTTCTCAGGATCTTTTGCTGCTATATTCTGGT 232426 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | || ||||| || | | ||||||| || | || ||| | || | Sbjct 232425 TAAAGAACAGAGGTCTTATGCCTGGACTCACTTTTTCCAGTGAACTCATCAGCAGAGATG 232366 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTT 22902 |||| || ||||||||||||| ||| || ||||| Sbjct 232365 AAGGGCTTCACTGTGACTTTGTTTGCCTGATGTTT 232331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355065345712852