Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq243700 107 2e-18 seq249408 104 2e-17 seq78631 100 3e-16 seq260417 95.1 1e-14 seq261730 91.5 1e-13 seq256153 91.5 1e-13 seq251325 91.5 1e-13 seq237447 86.0 6e-12 seq254768 82.4 8e-11 seq93685 82.4 8e-11 >seq243700 Length=14829 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| || || | || || || ||||| || ||||| ||| Sbjct 8867 GTGGACTCCTTTTGAATGTTGTAGTCACACAAAGTACTTCCATCTTCCAGTTGTTTGCCA 8808 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | |||||||| ||||| || ||||| || || ||| || ||| Sbjct 8807 GCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTC 8748 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||| || | ||| || ||||||| |||| ||| || |||| ||| Sbjct 8747 ACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTCATGATCTGTCCCGTCAGGGTT 8688 Query 139748 TTTACGAATATTTGCAT 139764 |||||||| || ||||| Sbjct 8687 TTTACGAAAATCTGCAT 8671 >seq249408 Length=399222 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 143633 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 143691 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||||| || ||||| || || ||| || Sbjct 143692 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 143751 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | ||| | ||| || | ||| || ||||||| || | ||||| || || Sbjct 143752 GGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTTCCCGT 143811 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||||||||| || ||||| Sbjct 143812 CAGGGTTTTTACGAAAATCTGCAT 143835 >seq78631 Length=346750 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 179210 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 179268 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||||| || ||||| || || ||| || Sbjct 179269 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 179328 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | ||| | ||| || | ||| || ||||||| || | || || || || Sbjct 179329 GGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTTTTTCCCGT 179388 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||||||||| || ||||| Sbjct 179389 CAGGGTTTTTACGAAAATCTGCAT 179412 >seq260417 Length=1194950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| || ||||| || ||| | Sbjct 432158 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 432099 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||||| | ||||| || || || Sbjct 432098 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 432039 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||| ||||||||||| Sbjct 432038 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 431979 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || |||| || || ||||| || ||||| Sbjct 431978 TCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 431932 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || ||| | Sbjct 431930 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 431871 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||||| | ||||| || || || Sbjct 431870 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 431811 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||| ||||||||||| Sbjct 431810 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 431751 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || || ||||| || || || ||||| Sbjct 431750 TCGAGGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCAT 431704 >seq261730 Length=739691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||||||||| || || || || | |||||| || || Sbjct 78729 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTCTTCCAGTTGC 78670 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| ||||||| | |||||||| ||||| || |||| || || || || Sbjct 78669 TTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTGCTTCCTTATCCTGTATCTTG 78610 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | ||| | ||| || | ||| || ||||||| || | ||||| || ||| Sbjct 78609 GCTTTCACATTTTCTATTGTATCCGAGGGATCAACCTCAAGAGTGATGGTCTTTCCCGTC 78550 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || || || Sbjct 78549 AGGGTTTTTACGAAAATCTGTAT 78527 >seq256153 Length=874984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 311688 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 311746 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||| | ||||| || | ||| || || ||| || Sbjct 311747 CTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAATTCTTTCCTTATCCTGGATCTT 311806 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | ||| | ||| || | ||| || |||||| || | ||||| || || Sbjct 311807 GGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTCAAGAGTGATGGTCTTTCCTGT 311866 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||||||||| || ||||| Sbjct 311867 CAGGGTTTTTACGAAAATCTGCAT 311890 >seq251325 Length=352111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| ||||||||||| || || || || | || | ||||| || || Sbjct 311102 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCA-TCTTCCAGTTG 311160 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | || ||||| ||||| || |||||||| | ||| || Sbjct 311161 CTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGAATTCCTTCTTTATTCCGGATCTT 311220 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||||| | ||| | ||| || | || || ||||||| || | ||||| || | Sbjct 311221 GGCTTTTACATTTTCTATTGTATCTGAGGATTCAACCTCAAGAGTGATGGTCTTTCCCAT 311280 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||||| ||| || ||||| Sbjct 311281 CGGAGTTTTTATGAAAATCTGCAT 311304 >seq237447 Length=29837 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || ||| | || | || | ||||| || || Sbjct 13434 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAAAGTACGTCCA-TCTTCCAGTTG 13376 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||| | || ||||| || || ||| || Sbjct 13375 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGATGAATTCCTTCCTTATCCTGGATCTT 13316 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | ||| ||| | | ||| || ||||||| || | ||||| || || Sbjct 13315 GGCTTTCACATTTTCTGTTGTACCCGAGGGTTCAACCTCAAGAGTGATGGTCTTTCCTGT 13256 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || |||||||| || || ||||| Sbjct 13255 CAGGGTTTTTACAAAAATCTGCAT 13232 >seq254768 Length=650996 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| || | ||| | || |||||||| || ||||| ||||| Sbjct 217974 GCCACCCCGGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 218033 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || ||||| |||| || | ||||| || || || Sbjct 218034 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGG 218093 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| || || | | || | ||||| |||||||||| Sbjct 218094 AATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 218153 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 218154 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 218201 >seq93685 Length=1386 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| || | ||| | || |||||||| || ||||| ||||| Sbjct 574 GCCACCCCGGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 633 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || ||||| |||| || | ||||| || || || Sbjct 634 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGGGG 693 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| || || | | || | ||||| ||||||| || Sbjct 694 AATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTAC 753 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 754 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || || || || || ||||| ||||| | |||| | Sbjct 815 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCG 874 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| |||| || | ||||| || || || ||||| || || Sbjct 875 TCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 934 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 935 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 994 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 995 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494395463932800