Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30]
269,084 sequences; 3,286,013,499 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq249408 109 6e-19
seq243700 109 6e-19
seq78631 104 2e-17
seq261730 96.9 4e-15
seq256153 95.1 1e-14
>seq249408
Length=399222
Score = 109 bits (120), Expect = 6e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030
||| || | ||||| || || || ||||| |||||||| || || || | || | |
Sbjct 143623 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 143681
Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090
|||| ||||| || |||||| ||||||| | |||||||| ||||| || ||||| || |
Sbjct 143682 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 143741
Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150
| || || ||| | | ||| | || |||| |||||| || |||| ||| | |
Sbjct 143742 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 143801
Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || |||| ||||||||||| || |||||
Sbjct 143802 TCTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 143835
>seq243700
Length=14829
Score = 109 bits (120), Expect = 6e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031
||| || | | ||| || || || ||||| |||||||| || | || || || ||
Sbjct 8883 CAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCACACAAAGTACTTCCATC 8824
Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
||| |||||||| |||||| ||||||| | |||||||| ||||| || ||||| || ||
Sbjct 8823 TTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 8764
Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151
|| || ||| | | ||| | || |||| |||||| || |||| ||||| |
Sbjct 8763 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTCATGAT 8704
Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || |||| ||||||||||| || |||||
Sbjct 8703 CTGTCCCGTCAGGGTTTTTACGAAAATCTGCAT 8671
>seq78631
Length=346750
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030
||| || | ||||| || || || ||||| |||||||| || || || | || | |
Sbjct 179200 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 179258
Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090
|||| ||||| || |||||| ||||||| | |||||||| ||||| || ||||| || |
Sbjct 179259 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 179318
Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150
| || || ||| | | ||| | || |||| |||||| || |||| ||| | |
Sbjct 179319 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 179378
Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| || || |||| ||||||||||| || |||||
Sbjct 179379 TTTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 179412
>seq261730
Length=739691
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031
||| || | ||||| || || || ||||| |||||||| || || || | |||
Sbjct 78739 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTC 78680
Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
||| ||||| || |||||| ||||||| | |||||||| ||||| || |||| || ||
Sbjct 78679 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTGCTTCCTTATC 78620
Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151
|| || ||| | | ||| | || |||| ||| || || |||| ||| | ||
Sbjct 78619 CTGTATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGATCAACCTCAAGAGTGATGGT 78560
Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| || |||| ||||||||||| || || ||
Sbjct 78559 CTTTCCCGTCAGGGTTTTTACGAAAATCTGTAT 78527
>seq256153
Length=874984
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030
||| || | ||||| || || || ||||| |||||||| || || || | || | |
Sbjct 311678 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 311736
Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090
|||| ||||| || |||||| ||||||| | |||||| | ||||| || | ||| || |
Sbjct 311737 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAATTCTTTCCTTAT 311796
Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150
| || || ||| | | ||| | || |||| |||||| | |||| ||| | |
Sbjct 311797 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTCAAGAGTGATGG 311856
Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || |||| ||||||||||| || |||||
Sbjct 311857 TCTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 311890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505309031714880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |