Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq249408 109 6e-19 seq243700 109 6e-19 seq78631 104 2e-17 seq261730 96.9 4e-15 seq256153 95.1 1e-14 >seq249408 Length=399222 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 143623 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 143681 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| ||||||| | |||||||| ||||| || ||||| || | Sbjct 143682 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 143741 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || ||| | | ||| | || |||| |||||| || |||| ||| | | Sbjct 143742 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 143801 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || |||| ||||||||||| || ||||| Sbjct 143802 TCTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 143835 >seq243700 Length=14829 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | | ||| || || || ||||| |||||||| || | || || || || Sbjct 8883 CAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCACACAAAGTACTTCCATC 8824 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| |||||||| |||||| ||||||| | |||||||| ||||| || ||||| || || Sbjct 8823 TTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 8764 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || ||| | | ||| | || |||| |||||| || |||| ||||| | Sbjct 8763 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTCATGAT 8704 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||| ||||||||||| || ||||| Sbjct 8703 CTGTCCCGTCAGGGTTTTTACGAAAATCTGCAT 8671 >seq78631 Length=346750 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 179200 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 179258 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| ||||||| | |||||||| ||||| || ||||| || | Sbjct 179259 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 179318 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || ||| | | ||| | || |||| |||||| || |||| ||| | | Sbjct 179319 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 179378 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||| ||||||||||| || ||||| Sbjct 179379 TTTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 179412 >seq261730 Length=739691 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| || || || ||||| |||||||| || || || | ||| Sbjct 78739 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTC 78680 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| ||||| || |||||| ||||||| | |||||||| ||||| || |||| || || Sbjct 78679 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTGCTTCCTTATC 78620 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || ||| | | ||| | || |||| ||| || || |||| ||| | || Sbjct 78619 CTGTATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGATCAACCTCAAGAGTGATGGT 78560 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || |||| ||||||||||| || || || Sbjct 78559 CTTTCCCGTCAGGGTTTTTACGAAAATCTGTAT 78527 >seq256153 Length=874984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 311678 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 311736 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| ||||||| | |||||| | ||||| || | ||| || | Sbjct 311737 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAATTCTTTCCTTAT 311796 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || ||| | | ||| | || |||| |||||| | |||| ||| | | Sbjct 311797 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTCAAGAGTGATGG 311856 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || |||| ||||||||||| || ||||| Sbjct 311857 TCTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 311890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505309031714880