Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq257629 116 3e-21 seq250856 87.8 2e-12 >seq257629 Length=1333514 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||| |||| | || |||||||| ||||||||| |||| ||||||||| Sbjct 756858 GGTTACCTGGGTTGCGAGGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 756917 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || || || || || ||||| ||||| || | || |||||||||||| Sbjct 756918 CCCCAGGCTGAGAACCATGGCCCAGAAATCAAGGAGCATGTGAGTTCCCTGGGAGAAAAG 756977 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || || | | ||||| ||||| Sbjct 756978 CTGAAGACCCTCCGGCAGAGGCTGCGGCGCTG 757009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| |||||||||||||| || || ||||| |||||||||||||||||||| || || Sbjct 759178 AGGCGTCTACAAGGCCATGAGTGAATTTGACATCTTCATCAACTACATAGAATCCTATAT 759237 Query 129164 GACTACTAAATAATAAAA 129181 ||| | | || | ||||| Sbjct 759238 GAC-ATTGAAGATTAAAA 759254 >seq250856 Length=363029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 |||| ||| || || ||||| || || | || ||||| | || ||||| | || Sbjct 242975 ATGCATTCACAAATCAGCTGTGCAATTCAATCACCCTTTTCCACTTCAAACTTTTCTTTG 243034 Query 5375 CCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCG 5434 || || |||||||||| |||| | || | |||| |||||||| || || || ||||| Sbjct 243035 CCAAAATTAAACAGCA-CACCAC--CACTTCCTCTATAGTCTTCCTCTATGACACCAGCT 243091 Query 5435 CCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAA 5494 || || || || |||||||| | || | ||| ||| |||| |||| | ||| || || Sbjct 243092 CCTACATCTATGAAGTGTTTTGCAGCTATGCCAGAATGTGGAGCTAGTCTTCCATAACAT 243151 Query 5495 CCAGGTGGGAGCTTTATCAGAAGGTCAGT 5523 |||| || || |||| ||| ||| || Sbjct 243152 CCAGAAGGAAGGGCTATCTGAATGTCTGT 243180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446244369142080