Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq251882 170 1e-37 seq205975 158 8e-34 seq261394 109 4e-19 >seq251882 Length=196254 Score = 170 bits (188), Expect = 1e-37 Identities = 397/593 (67%), Gaps = 17/593 (3%) Strand=Plus/Plus Query 25385 TGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAG 25444 ||||| || ||||| || || | || |||||| | ||||| | | | ||||| ||| Sbjct 179215 TGTGGTAA--GGTCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGCCTTGATGTGATTCAG 179272 Query 25445 GTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTA 25504 ||| | || || | ||| || ||||| || || || | || || |||| || Sbjct 179273 GTAAATATGTGC-------AAAGTATGTACAAAGTCACCTGGCTTCAGGCCTGTAATGTG 179325 Query 25505 AGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCAT 25564 | |||||||| || || ||| |||||||||||||| || | || || || |||| Sbjct 179326 CCCGATCATGTAGGTAAGCAGAGCATAGCTGGCGATGTTGAAATGCACACCCAAGCCCAA 179385 Query 25565 GTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGAC 25624 || || |||| | ||||| ||||| |||||||||| | | || |||||| ||||| Sbjct 179386 GT-CCTCCGAACGTTGGTACAGCTGGCACGAGAGCTGCT-GCTGCCCACGTACAACTGGT 179443 Query 25625 ACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAG-TCTTTAGGGTTCCAGGCGCAC 25683 | | || || |||||| || ||||| || || ||| ||||| || ||||| || ||| Sbjct 179444 AGAGGGCGTGGCACGGCGGCAGAGCCATCAG----AAGATCTTTTGGATTCCAAGCACAC 179499 Query 25684 ACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGA 25743 | |||||| | ||||| | |||||| |||| || || ||||| || Sbjct 179500 ATGATGATTCTTCTGTCATTGGGGTTGGTTTTGATTGTGTCAATCACCTTCTGCAGTTGG 179559 Query 25744 TCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTC 25803 || | || || ||||| |||| ||| || |||| ||||| || |||| |||| Sbjct 179560 TCTCCTCCTTGGCCTGAGTAATCTGAATTCACATCTTTGTATTCTGCCCCAAAATGCCTC 179619 Query 25804 CACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTA 25863 | ||| || || | ||| | || | |||||| || || || || ||| Sbjct 179620 CGCTGAAAGCCAGAAACCAGGCCCAAGTCTCCTTCCTCTCTCATGGAGAATCCCAGACAG 179679 Query 25864 TCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 25923 |||||||||| ||| ||| ||||||||||||| || || |||| |||| ||| Sbjct 179680 TCCAAAAAGTTGTGGGATCCACTGGCGTCCCAGATTTTCACTTCCTTGGAAGAGATTTCT 179739 Query 25924 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGCCTT 25976 || | ||||||| || | || ||||||| || |||| || || ||||| Sbjct 179740 TTAG-CATTGTGGATCCCTTAACAAACCACAACAACTCCTCCAAAACAGCCTT 179791 >seq205975 Length=138355 Score = 158 bits (174), Expect = 8e-34 Identities = 385/579 (66%), Gaps = 7/579 (1%) Strand=Plus/Minus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448 ||||||| ||| | || | || |||||| | ||||| | ||| | ||||| | |||| Sbjct 52432 GGAAAGG-TCTCGATTCTCGCTGCAGCTGAATTTTCAGTGCTTCAATGTGATTCCGGTAA 52374 Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 | || || ||||||| ||| || ||||| || || || | || || | | || || Sbjct 52373 ATTTGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCCCCTGATGTGTGCG 52314 Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGT--TAAAGGGTACCCCGAACCCCATGT 25566 |||||| | || | || || | ||||| ||| | || || | |||| ||||||| Sbjct 52313 ATCATGCAGTTGCGCAGGGCGTGGTTGGCGGTGTGTTGAAAGGCAGGCCGAGGCCCATGT 52254 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||| |||||| ||||| ||||||||||| | || | | | ||||| || Sbjct 52253 CTCCT-GACTGCTGGTACAGCTGGCACGAGAGCTCACTGCTGCCCCTGGAGAACTGGCAG 52195 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || || ||| || | || ||| || | ||||| || ||||| || || | | Sbjct 52194 AAGGCGTGGCATGGCAGCAGCATTATCAGAGGAAGATCTTTTGGATTCCAAGCACAAATG 52135 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | || | | |||||| |||| || ||||||||||| || Sbjct 52134 ATGATTCTTCTATAGTTGGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGCTGGTCT 52075 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 | | || |||| |||| || | || |||| |||||||| |||| ||||| | Sbjct 52074 TCTCGTTGGCCTAAGTAATCTGAATTCCTATCTTTGTATTCTGCTCCAAAATGCCTCCCC 52015 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866 || || || || ||||| || | |||||| |||| || || ||| | ||| Sbjct 52014 TGAAAACCATAAACCGGGCCCAAGTCTCCTTCTTTGGTGGAG---AATCCCAGGCTGTCC 51958 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926 |||||||| | ||| ||| |||||||| |||| || || || || ||||| ||||| Sbjct 51957 AAAAAGTCGCGGGATCCAGTGGCGTCCTAGATTTTCACTCCTTTGGAAGAGAGGTCTTTA 51898 Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 | ||||| || || ||| |||||||||| |||| || Sbjct 51897 GCATTTGTAGATCCCTTGATAAACCACAGCAACTCCTCC 51859 >seq261394 Length=468452 Score = 109 bits (120), Expect = 4e-19 Identities = 115/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||| || || || || | |||||| Sbjct 93293 GCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAAGGCACACCCAGGCCCATG 93352 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 |||||| |||| ||||| ||||||||||||||||| || || |||||| ||||| || Sbjct 93353 TCCCCC-GACCGTTGGTACAGCTGACACGAGAGCTCGCCGCTGCCCACGTAGAACTGGCA 93411 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | |||||| || || || || || Sbjct 93412 GAGGGCATGGCACGGCGGCAGCGCCATCAG 93441 Score = 98.7 bits (108), Expect = 7e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 25782 GTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTC 25841 ||| ||||| || |||| ||||||||| || || || ||||| || | |||||| ||||| Sbjct 97241 GTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCCAAGTCTCCTTCTTC 97300 Query 25842 CCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTT 25901 ||| || ||| | ||||||||||| | ||| |||||||| |||||||| || Sbjct 97301 TCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCGCGGGATCCATTGGCATCCCAGATTTT 97360 Query 25902 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 || ||||| || || ||||| | |||||||| || Sbjct 97361 CACTCCCTTGGAAGAAAGTTCTTTAGCATTTGTGGATCC 97399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339022131921132