Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq261856 87.8 9e-13 seq261297 86.0 3e-12 seq250776 84.2 1e-11 seq236910 84.2 1e-11 seq238793 82.4 4e-11 >seq261856 Length=190800 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 83550 GGATCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 83491 Query 11528 CC 11529 || Sbjct 83490 CC 83489 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 880 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 821 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 820 CTGAGCTAACCGGCC 806 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 10940 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 10999 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 11000 CTGAGCTAACCGGCC 11014 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 127407 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 127348 Query 11528 CCGTC 11532 || || Sbjct 127347 CCTTC 127343 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | ||||||| | |||||||||| ||||||| ||||||||||||| Sbjct 127794 AAGAAAAAACC---TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 127738 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 127737 CACGCTCTAACCAACTGAGCTAACCGGCC 127709 >seq261297 Length=436841 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||| ||| || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 167952 TAAAATGTCACAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACC 167893 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 167892 ACGCTCTAACCAACTGAGCTAACCGGCC 167865 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 199879 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 199938 Query 11528 CC 11529 || Sbjct 199939 CC 199940 >seq250776 Length=603633 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| ||||||| | ||||||||||| ||||||| |||||||||||||| || Sbjct 539855 GGATCGAACCTGCGACCTTGGTGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 539796 Query 11528 CCG 11530 ||| Sbjct 539795 CCG 539793 >seq236910 Length=6746 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 880 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 821 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 820 CTGAGCTAACCGGCC 806 >seq238793 Length=140321 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 17053 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 16994 Query 11528 CC 11529 || Sbjct 16993 CC 16992 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260633649742384