Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq253248 181 1e-40 seq252333 105 9e-18 >seq253248 Length=169641 Score = 181 bits (200), Expect = 1e-40 Identities = 195/258 (76%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || || | |||||||| | ||||| || | || || ||| |||||||||||| || Sbjct 88885 CCTATCAGGATGAGTCTGCTTGTCTGGAATAACTGCTCATCATCCCATTCTGGATGCTCC 88826 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 |||| || ||||||||||||||||| ||||||| ||||| || || || |||||||| Sbjct 88825 TGTTTAAGCACATCGCACACTCTGTTATGTTCCCGAAGCCATATTGTTGCATACATCATC 88766 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 |||||||||||||| || || |||| || || ||||| || |||| | ||| || || Sbjct 88765 AGACCAGGCACCAGACCGAAGACCTCCTGCCCCACAGCAAGCCGCAGGTGTTCAGGGACA 88706 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852 | || || |||||||| | ||||| ||||||||| | ||| |||||||| || ||| Sbjct 88705 TGAGGGGGGTAGATCATCTCTACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCG 88646 Query 9853 TCAATAATCTGATACTTA 9870 |||| |||| | | ||| Sbjct 88645 CCAATTATCTAAAAATTA 88628 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| |||| |||||| ||||| | || ||| | ||| ||| | || Sbjct 87781 TCTTACCCCATGACCCAATCCTTTGGTGAAACCTGGTCCTTGTTTGTGATCTGTCTTGAA 87722 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || || |||| || |||||||| | || |||||||| ||||| Sbjct 87721 AAACTGATGGGTGAAGTGCTGAGCAAAGAACGCAAACATCATATTTGTGCCCTGAGGATC 87662 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 ||| |||| | || | |||||| |||||||||| Sbjct 87661 GGGGATGAACTTTCTTCTTAGAAGAAACTTTTCCACAA 87624 >seq252333 Length=163683 Score = 105 bits (116), Expect = 9e-18 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || || | || || || || ||||||| |||||||| | || | Sbjct 51968 TCTTGACAATGTTGAAGCCTATCTCACCACCAAACGTGCTGGACTTCCAGTACTCTGGAG 52027 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||| | ||| | | |||||| ||||||||||| |||||||| | || | || | Sbjct 52028 AACAGACGGGATTCCCTAGGAGGCCCTTGAGGGAAAAAGGAGCCCCAATTTCTATCATAC 52087 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917 |||| || ||||||| ||| || || ||| | || ||||| || | ||| |||||| Sbjct 52088 TCTCCCCAAAGATGGAGTTTGGGTGGCACTTCT-CAAGAAGAAGCCCCGGGTAGAACTCC 52146 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | || ||||||||||| || | || || || || || || ||||| |||||| Sbjct 52147 AGGGCATCGATGTCTCCATACAACTCCTCCAGCTCAGCTGCCATCTCCTTCTCTCCT 52203 Score = 89.7 bits (98), Expect = 7e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 10025 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTC 10082 ||| || |||||||| |||| | || |||||| | || || || |||| | ||| Sbjct 64575 TGTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCGGGACCCATCTTGCCAGA--AGTT 64632 Query 10083 CTAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGG 10142 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||| Sbjct 64633 TTGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGG 64692 Query 10143 GGATCGGGAGTGAAGGTCCTCC 10164 || || || |||| |||||| Sbjct 64693 GGGTCAGGTATGAACTTCCTCC 64714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706141641408960