Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq250776 172 9e-39 seq261686 163 4e-36 seq255892 140 5e-29 seq257185 132 8e-27 >seq250776 Length=603633 Score = 172 bits (190), Expect = 9e-39 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| || || || |||||||||||||| |||||||||||||| Sbjct 110771 GCCAAGCGCCATCGCAAGGTGCTACGTGACAACATCCAAGGAATTACCAAGCCAGCTATT 110712 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| || || || || ||||| |||| || | |||| ||||||| | Sbjct 110711 CGACGTCTGGCTCGGCGCGGCGGCGTAAAGCGGATCTCCGGTCTTATCTACGAAGAGACT 110652 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || ||| | | |||||| | || || | ||||| ||| Sbjct 110651 CGTGGGGTGCTGAAGGTTTTTCTCGAAAACGTTATTCGCGACGCGGTTACTTATACTGAG 110592 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||||||| ||||||| | || ||||| |||| || |||||| Sbjct 110591 CACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTATATGCGCTGAAGCGGCAAGGC 110532 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | |||||||| || Sbjct 110531 CGCACTCTCTATGGTTTCGG 110512 Score = 161 bits (178), Expect = 2e-35 Identities = 197/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || || |||| | ||| || || || |||||||| || |||||||| ||||| Sbjct 268803 CGCTAAACGCCACCGCAAAGTTCTGCGCGACAATATCCAAGGCATAACCAAGCCGGCTAT 268744 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| | ||||| || || ||||| | || || | | |||||||| | Sbjct 268743 CCGTCGTCTGGCCAGGCGTGGGGGCGTAAAGCGCATTTCCGGCCTCATTTATGAAGAAAC 268684 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| ||||| | ||||| ||| ||| || | ||| ||| || ||| || || Sbjct 268683 GCGCGGTGTTCTGAAGGTATTCCTGGAGAACGTGATTCGTGACGCTGTCACCTACACTGA 268624 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||||| || ||||| |||||| | ||||| | ||||| || | || ||||| || Sbjct 268623 GCATGCTAAGCGCAAGACGGTCACCGCTATGGACGTAGTCTACGCTCTCAAGCGTCAGGG 268564 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||| | | |||| || || || | |||| Sbjct 268563 CCGCACGCTTTACGGCTTCGGCGGCTAAT 268535 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | || || || ||||| || || |||||||| || ||||| Sbjct 185989 CGCTAAGCGCCACCGTAAGGTGCTGCGCGACAACATTCAGGGCATCACCAAACCTGCTAT 186048 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||| |||||||| || ||||| | ||||| | |||| || |||| Sbjct 186049 CCGGCGTTTAGCTCGGCGTGGTGGTGTGAAGCGCATTTCTGGGCTCATCTACGAGGAGAC 186108 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || | ||| || || | || || || ||| ||||| Sbjct 186109 TCGAGGGGTGCTGAAGGTGTTTTTGGAGAATGTGATTCGGGACGCCGTCACCTACACCGA 186168 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| |||||||||||| |||||||| |||||||||| |||| || ||||| Sbjct 186169 ACACGCCAAACGCAAGACTGTCACCGCCATGGATGTCGTCTATGCGCTGAAGCGACAAGG 186228 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | |||||||||| || Sbjct 186229 CCGCACCCTTTATGGTTTCGG 186249 Score = 147 bits (162), Expect = 3e-31 Identities = 185/253 (73%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| ||||| || ||| ||||||| ||||| || Sbjct 338557 CGCGATAACATCCAGGGCATCACCAAGCCTGCTATTCGGCGTTTGGCTCGGCGTGGCGGC 338498 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| | ||||| | |||| ||||||| || | ||| ||||| | || | Sbjct 338497 GTAAAGCGTATTTCTGGTCTCATCTACGAAGAGACCCGAGGTGTACTGAAGGTGTTTTTG 338438 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || |||| ||||||| | || |||||||| ||||| || ||||| ||||| Sbjct 338437 GAAAATGTGATCCGTGATGCTGTTACTTACACCGAGCATGCTAAGCGGAAGACAGTCACT 338378 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| |||| || || | || || || ||||| | ||||||| || || || Sbjct 338377 GCTATGGACGTCGTGTACGCGCTCAAGCGCCAGGGCCGCACCCTTTATGGCTTCGGCGGT 338318 Query 16697 TAATCTTCTAATC 16709 ||| | ||||||| Sbjct 338317 TAAAC-TCTAATC 338306 Score = 122 bits (134), Expect = 1e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || || |||||||| ||||||||||| || ||||| |||||||| || || || Sbjct 104353 TCTGCGCGACAATATCCAAGGCATCACCAAGCCCGCCATCCGGCGTCTGGCCCGGCGCGG 104412 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| |||| || | | || || |||| || | || ||||| | || Sbjct 104413 CGGCGTGAAGCGCATCTCGGGCCTCATTTACGAGGAGACCCGCGGGGTGCTGAAGGTTTT 104472 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || || | || ||| || ||| ||||||||||| || || ||||| || Sbjct 104473 CCTGGAGAATGTGATTCGCGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACGGT 104532 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| ||||||| | || || || | || || || ||||| Sbjct 104533 CACCGCCATGGACGTGGTTTACGCGCTTAAGCGCCAGGGCCG 104574 >seq261686 Length=368935 Score = 163 bits (180), Expect = 4e-36 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| | || || || ||||||||||| |||||||| || || ||| Sbjct 150398 GCTAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAAGGCATCACCAAACCCGCCATC 150339 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||| | || ||||| || || ||| ||||||| | |||| || || | Sbjct 150338 CGACGTCTGGCTAGGCGCGGTGGCGTGAAACGTATCTCTGGCCTCATCTACGAGGAAACC 150279 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| | ||||| ||| || |||| ||| ||| || ||| |||||| Sbjct 150278 CGGGGGGTACTGAAAGTATTCCTGGAGAATGTGATCCGTGACGCTGTCACCTACACCGAG 150219 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| |||||| |||||||| | ||||| || | || || || || Sbjct 150218 CACGCCAAGCGTAAGACGGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGGA 150159 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||||||||| Sbjct 150158 CGCACCCTCTATGGTTTTGG 150139 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| ||| || ||||||||||| || ||||| ||||| || || Sbjct 88141 CGCTAAGCGCCACCGCAAGGTTCTGCGGGATAACATCCAGGGCATCACAAAGCCTGCCAT 88200 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||| | || || || || ||||| | || || || |||| || |||| Sbjct 88201 CCGGCGTCTGGCTAGGCGCGGCGGTGTGAAGCGCATTTCCGGCTTAATCTACGAGGAGAC 88260 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||| || | | || || | ||||||| || ||| ||||| Sbjct 88261 CCGCGGGGTACTGAAGGTCTTTCTAGAAAATGTGATTCGTGATGCTGTCACCTACACCGA 88320 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| | ||||| | ||||| ||| | || || || || Sbjct 88321 GCACGCCAAGCGCAAGACGGTCACCGCTATGGACGTGGTCTACGCACTCAAGCGCCAGGG 88380 Query 16672 CCG 16674 || Sbjct 88381 TCG 88383 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| ||||| || | || || || || ||||| || || || ||||| ||||| Sbjct 134759 GCTAAACGTCACCGTAAGGTGCTGCGCGACAATATCCAGGGCATAACTAAGCCTGCTATT 134700 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| || || || || |||||| ||||||| | | || ||||||| | Sbjct 134699 CGGCGTCTGGCTCGGCGAGGAGGTGTGAAGCGTATCTCTGGCCTTATTTACGAAGAGACT 134640 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| | || | | | || |||| || ||| || ||| ||||| Sbjct 134639 CGCGGCGTTCTGAAAGTGTTTTTAGAAAATGTGATCCGCGACGCTGTCACCTACACCGAA 134580 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| |||||||| | ||||| || |||||||| || ||| Sbjct 134579 CACGCCAAGCGCAAGACAGTCACCGCCATGGATGTGGTCTACGCGTTGAAACGCCAGGGC 134520 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 134519 CGCACCCTCTACGGATTTGG 134500 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || |||||||| || || |||||||| || || || Sbjct 124253 CGCTAAGCGCCACCGTAAAGTACTACGTGATAACATTCAGGGTATCACCAAACCTGCAAT 124312 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| |||||||| || || || || |||| || | |||| || |||| Sbjct 124313 TCGCCGCCTGGCCCGTCGTGGCGGTGTGAAACGCATCTCCGGCCTTATCTACGAGGAGAC 124372 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | || || ||| ||| |||| ||| ||| || ||||||||| Sbjct 124373 CCGCGGCGTGCTTAAGGTGTTTCTGGAGAACGTAATCCGTGACGCTGTCACCTATACCGA 124432 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | || || || | || || || || Sbjct 124433 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 124492 Query 16672 CCG 16674 ||| Sbjct 124493 CCG 124495 >seq255892 Length=93466 Score = 140 bits (154), Expect = 5e-29 Identities = 191/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| |||| | | |||| ||||||||||| || || |||||||| ||| Sbjct 22998 GCTAAGCGTCACCGCAAGGTTTTGAGAGACAACATCCAAGGGATTACAAAGCCAGCCATC 22939 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| ||||| || || ||||| | ||||| | | ||||| |||| Sbjct 22938 CGGCGTCTCGCTCGGCGTGGAGGGGTTAAGCGGATTTCTGGCCTTATTTATGAGGAGACG 22879 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||| | || || ||| |||||| | ||||| | || || ||| Sbjct 22878 AGAGGTGTGCTGAAGGTATTTCTGGAGAACGTTATACGGGATGCAGTTACTTACACGGAG 22819 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| ||||| || |||||||| | || || || | ||||| || || Sbjct 22818 CACGCCAAGCGTAAAACTGTTACTGCCATGGATGTGGTGTACGCCCTCAAACGCCAGGGA 22759 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| || ||| ||||| Sbjct 22758 CGCACCCTCTATGGCTTCGGAGGTTAA 22732 >seq257185 Length=572208 Score = 132 bits (146), Expect = 8e-27 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || || || ||||| || ||||||||||| || | Sbjct 375834 CGCCAAGCGTCACCGGA-AGGTCTTACGGGACAATATCCAGGGCATCACCAAGCCTGCGA 375892 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| ||||| || ||||| || || ||||| |||| || | |||| || || | Sbjct 375893 TCCGTCGGCTGGCCCGCCGTGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAAA 375952 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || |||| |||| || ||| || |||| || || | || || | Sbjct 375953 CCCGTGGAGTGCTGAAAGTCTTTCTGGAGAATGTGATCCGCGACGCGGTGACTTACACTG 376012 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| |||||||| | || || || |||||||| || | Sbjct 376013 AGCACGCGAAACGCAAGACGGTCACGGCCATGGATGTGGTGTACGCTTTGAAACGCCAGG 376072 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || ||||| || Sbjct 376073 GCCGCACTCTGTACGGTTTCGG 376094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78829174615212