Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq249408 84.2 2e-11 seq78631 84.2 2e-11 >seq249408 Length=399222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || |||||||| | || ||||| | ||||| | || | ||| | Sbjct 143839 CAAAATGCAGATTTTCGTAAAAACCCTGACGGGAAAGACCATCACTCTTGAGGTTGAACC 143780 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || || || || | || ||| ||||| || || ||||| || ||||| || Sbjct 143779 CTCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 143720 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || ||||| || | | ||||| ||||| ||||||| | | | ||||| Sbjct 143719 TCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 143660 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| || || ||| | ||||| || |||||||| | || || Sbjct 143659 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 143609 >seq78631 Length=346750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || |||||||| | || |||||| | ||||| | || | ||| | Sbjct 179416 CAAGATGCAGATTTTCGTAAAAACCCTGACGGGAAAAACCATCACTCTTGAGGTTGAACC 179357 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || || || || | || ||| ||||| || || ||||| || ||||| || Sbjct 179356 CTCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 179297 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || ||||| || | | ||||| ||||| ||||||| | | | ||||| Sbjct 179296 TCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 179237 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| || || ||| | ||||| || |||||||| | || || Sbjct 179236 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 179186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477052395084480