Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq262852 102 2e-16 seq257400 102 2e-16 seq253961 102 2e-16 seq250296 100 7e-16 >seq262852 Length=263465 Score = 102 bits (112), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || | ||||| |||||| ||| | | | | ||| Sbjct 13241 AAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGAACAAAGAAGCTACCTATGGAGAA 13182 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || | | || ||||| | || ||||| || ||||||||||| | ||| | | ||| Sbjct 13181 TGTGTAGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGGATCCATC 13122 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || |||| | | | || || || || || ||| | ||||| | |||||| Sbjct 13121 TTCTGGCTCAAGAAACAAGGACTGATACCTGGCCTCACATTTGCCAATGAACTTATTAGC 13062 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||||||||| | || ||| ||||| || Sbjct 13061 AGAGATGAGGGTTTACACTGCGACTTTGCCTG 13030 >seq257400 Length=867372 Score = 102 bits (112), Expect = 2e-16 Identities = 326/503 (65%), Gaps = 6/503 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||| ||||| || ||||| | |||| ||| | | | | ||| Sbjct 654340 AAGAAGAAGGCAGACTGGGCCTTGCGTTGGATTGGGGACAAAGAAGCTACCTATGGAGAA 654281 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| | | || ||||| | || ||||| || ||||||||||| | ||| | ||| Sbjct 654280 CGTGTCGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCCATC 654221 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||||| Sbjct 654220 TTCTGGCTTAAGAAACGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGC 654161 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 ||||||||||| | || || ||||| || | | | || || || | |||| Sbjct 654160 AGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTCATGT-TC--AAACACCTGCTTCAC 654104 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 |||| | | | | | ||| || || |||| ||||| ||| | |||| Sbjct 654103 AAACCTTCGGAACAGAGAGTAAAAGAAATAATTATCAATGCTGTTAGGATAGAACAGGAG 654044 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 || || ||||| || || || | || ||||| || ||| | | ||||| Sbjct 654043 TTCCTTACGGAGGCCTTGCCTGTCAAGCTGATTGGAATGAATTGCACTTTAATGAAGCAG 653984 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || ||| |||| || ||||| | || | | ||| |||| ||| || | Sbjct 653983 TACATTGAATTCGTGGCAGACAGACTTATGCTGGAACTGGGTTTCAGCAAGGTTTTCAGA 653924 Query 22852 GTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTC 22911 || | ||||| ||||| | ||||| |||||| || ||||| ||||| || ||||| Sbjct 653923 GTGGAGAATCCCTTTGACTTTATGGAGAATATTTCGCTGGAAGGGAAGACAAACTTCTTT 653864 Query 22912 GAAAAAAGAGTTGGTGAATACCA 22934 || || ||||| || || || || Sbjct 653863 GAGAAGAGAGTAGGCGAGTATCA 653841 >seq253961 Length=405542 Score = 102 bits (112), Expect = 2e-16 Identities = 138/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||| ||||| || | ||||| |||||| ||| | | | | ||| Sbjct 310608 AAGAAGAAGGCAGACTGGGCCTTGCATTGGATTGGGAACAAAGAAGTTACCTATGGAGAA 310549 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 | | || | || ||||| | || ||||| || ||||||||||| | ||| | ||| Sbjct 310548 CATGTTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATC 310489 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||| | | | | ||||| || || || ||||| ||||| | |||||| Sbjct 310488 TTCTGGCTCAAGAAATGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGC 310429 Query 22612 CGAGATGAGGGT 22623 ||||||||||| Sbjct 310428 AGAGATGAGGGT 310417 >seq250296 Length=373361 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 27152 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 27093 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 27092 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGGACGATCAAATGT 27033 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | ||||| ||| Sbjct 27032 AGCAACCTGTGCACAGAAATAGTAGAATATACC 27000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298860107623688