Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq251325 86.0 5e-12 seq249408 86.0 5e-12 seq78631 86.0 5e-12 seq254768 84.2 2e-11 >seq251325 Length=352111 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 |||||||| || ||||| ||||||||||||||||| | | ||||||||||| |||||| Sbjct 311208 AAAGAAGGAATTCCTCCTGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGAT 311149 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 | | | | || || ||||||||||| || ||||| ||||| | ||||| ||| Sbjct 311148 GGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATATTGTGTTGAGA 311089 >seq249408 Length=399222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || |||||||| | || ||||| | || || | || || || | Sbjct 143839 CAAAATGCAGATTTTCGTAAAAACCCTGACGGGAAAGACCATCACTCTTGAGGTTGAACC 143780 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || ||| ||||| || || ||||| || ||||| || Sbjct 143779 CTCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 143720 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||||||||| | | ||||||||||| ||||||| | | | || || Sbjct 143719 TCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 143660 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 ||||||||||| || || || ||||| | ||||| ||| Sbjct 143659 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 143620 >seq78631 Length=346750 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || |||||||| | || |||||| | || || | || || || | Sbjct 179416 CAAGATGCAGATTTTCGTAAAAACCCTGACGGGAAAAACCATCACTCTTGAGGTTGAACC 179357 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || ||| ||||| || || ||||| || ||||| || Sbjct 179356 CTCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 179297 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||||||||| | | ||||||||||| ||||||| | | | || || Sbjct 179296 TCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 179237 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 ||||||||||| || || || ||||| | ||||| ||| Sbjct 179236 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 179197 >seq254768 Length=650996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || || || | ||||| || | || ||| | || || ||| | Sbjct 218433 CAAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCC 218374 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | ||||| ||||| || || || ||||| || || || Sbjct 218373 CAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGA 218314 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | |||||||| || ||||||| | | | || ||||| Sbjct 218313 CCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTA 218254 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 218253 CAACATCCAGAAGGAATCCAC 218233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428526041548020