Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq260417 96.9 3e-15 seq254768 95.1 1e-14 seq43725 87.8 1e-12 >seq260417 Length=1194950 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || |||||||||||||||| || ||| | | || Sbjct 432372 CAGGACCAGGTGCAGGGTGGACTCTTTCTGTATGTTGTAGTCGGACAGGGTGCGGCCATC 432313 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || || || ||| | || | | ||| ||||| || | ||| || ||||| Sbjct 432312 CTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 432253 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| || | ||||||| Sbjct 432252 TTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATG 432195 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| || || || |||||||||||| Sbjct 432194 GTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCATT 432159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||||||||| || ||||||||||||| | Sbjct 431930 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 431871 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || || || ||| | || | | ||| ||||| || Sbjct 431870 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 431811 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| | ||||||| Sbjct 431810 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCCA 431753 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| ||||| || || | ||||| ||||| ||||||||| Sbjct 431752 CCTCGAGGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 431703 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| |||||||| || || ||||||||||||| | Sbjct 432158 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 432099 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || || || ||| | || | | ||| ||||| || Sbjct 432098 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 432039 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| | ||||||| Sbjct 432038 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCCA 431981 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| || || || || ||||||||| Sbjct 431980 CCTCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATT 431931 >seq254768 Length=650996 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| || || ||||| ||||| || |||||||| || | Sbjct 218203 CCTCCCCTGAGGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAG 218262 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | ||||||| ||| ||||| || Sbjct 218263 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 218322 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || ||| || | | | ||||| | ||||||| Sbjct 218323 ATGCCCTCCTTATCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCCA 218380 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||||||| || || ||||| || || || || |||||||||||| Sbjct 218381 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 218433 >seq43725 Length=1898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||| | || ||| | | || Sbjct 1334 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 1275 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || || || ||| | || | | ||| ||||| || | |||||| ||||| Sbjct 1274 TTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1215 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | ||||| | ||||||| || | |||||| Sbjct 1214 TTGGATCTTGGC--CTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGATA 1157 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || | ||||| ||||| ||||||||| Sbjct 1156 GTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1121 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| | | |||| Sbjct 1790 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCGTC 1731 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || || || ||| | || | | ||| ||||| || | ||| || ||||| Sbjct 1730 TTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 1671 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | ||||| | |||||| || | ||||||| Sbjct 1670 TTGGATCTTGGC--CTTGACGTTCTCAGTGGTGTCACTGGGCTCTACCTCGAGGGTGATG 1613 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || |||| ||| || || || || ||||||||| Sbjct 1612 GTCTTCCCGGACAGGGTCTTCACGAAGATCTGCATT 1577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403759529601160