Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq251325 96.9 2e-15 seq256153 82.4 5e-11 seq249408 82.4 5e-11 seq243700 82.4 5e-11 seq78631 82.4 5e-11 >seq251325 Length=352111 Score = 96.9 bits (106), Expect = 2e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 21928 ATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAG 21987 ||||||| || | ||| | ||||||||||| |||||||||||||| ||||| |||| Sbjct 311210 ATAAAGAAGGAATTCCTCCTGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAG 311151 Query 21988 ATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || | ||| || | || ||||| ||||| ||||| |||||||||||||| || || Sbjct 311150 ATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATATTGTGTT 311093 >seq256153 Length=874984 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 311773 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 311714 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||| ||||| || ||||||||| | || || Sbjct 311713 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 311679 >seq249408 Length=399222 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 143718 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 143659 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||| ||||| || ||||||||| | || || Sbjct 143658 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 143624 >seq243700 Length=14829 Score = 82.4 bits (90), Expect = 5e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||||||||||||||| |||||| || ||| || || ||| Sbjct 8788 CAGCAGAGACTGATCTTTGCTGGCAAACAACTGGAAGATGGAAGTACTTTGTGTGACTAC 8847 Query 22011 AATATTCAGAAGGAATCTACTCTTC 22035 || ||||| ||||| || ||||||| Sbjct 8848 AACATTCAAAAGGAGTCCACTCTTC 8872 >seq78631 Length=346750 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 179295 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 179236 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||| ||||| || ||||||||| | || || Sbjct 179235 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 179201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356950343595736